Multiple Observations HMM Learning by Aggregating Ensemble Models. - Nazanin Asadi; Abdolreza Mirzaei; Ehsan Haghshenas (IEEE Trans. Signal Process., 2013)

Accurate single individual haplotyping based on HuRef dataset using HapSAT algorithm. - Ehsan Haghshenas; Nadia Barjaste; Sayyed Rasoul Mousavi (Int. J. Funct. Informatics Pers. Medicine, 2014)

CoLoRMap: Correcting Long Reads by Mapping short reads. - Ehsan Haghshenas; Faraz Hach; Süleyman Cenk Sahinalp; Cédric Chauve (Bioinform., 2016)

Creating Discriminative Models for Time Series Classification and Clustering by HMM Ensembles. - Nazanin Asadi; Abdolreza Mirzaei; Ehsan Haghshenas (IEEE Trans. Cybern., 2016)

LRCstats, a tool for evaluating long reads correction methods. - Sean La; Ehsan Haghshenas; Cédric Chauve (Bioinform., 2017)

SAGE2: parallel human genome assembly. - Michael Molnar; Ehsan Haghshenas; Lucian Ilie (Bioinform., 2018)

lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data. - Ehsan Haghshenas; Süleyman Cenk Sahinalp; Faraz Hach (Bioinform., 2019)

CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme. - Hossein Asghari; Yen-Yi Lin; Yang Xu; Ehsan Haghshenas; Colin C. Collins; Faraz Hach (Bioinform., 2020)