A new algorithm to find all alternate optimal flux distributions of a metabolic network. - Ehsan Motamedian (Comput. Chem. Eng., 2015)

TRFBA: an algorithm to integrate genome-scale metabolic and transcriptional regulatory networks with incorporation of expression data. - Ehsan Motamedian; Maryam Mohammadi; Seyed Abbas Shojaosadati; Mona Heydari (Bioinform., 2017)

LAMOS: A linear algorithm to identify the origin of multiple optimal flux distributions in metabolic networks. - Ehsan Motamedian; Fereshteh Naeimpoor (Comput. Chem. Eng., 2018)

A benchmark-driven approach to reconstruct metabolic networks for studying cancer metabolism. - Oveis Jamialahmadi; Sameereh Hashemi-Najafabadi; Ehsan Motamedian; Stefano Romeo; Fatemeh Bagheri (PLoS Comput. Biol., 2019)