An algorithm for identifying dominant-edge metabolic pathways. - Ehsan Ullah; Kyongbum Lee; Soha Hassoun (ICCAD, 2009)

New Techniques for Polynomial System Solving - Ehsan Ullah (2012)

Decomposing Biochemical Networks Into Elementary Flux Modes Using Graph Traversal. - Ehsan Ullah; Calvin Hopkins; Shuchin Aeron; Soha Hassoun (BCB, 2013)

Algebraic Attacks Using IP-Solvers. - Ehsan Ullah (CASC, 2013)

MC3: a steady-state model and constraint consistency checker for biochemical networks. - Mona Yousofshahi; Ehsan Ullah; Russell Stern; Soha Hassoun (BMC Syst. Biol., 2013)

Discovery of substrate cycles in large scale metabolic networks using hierarchical modularity. - Gautham Vivek Sridharan; Ehsan Ullah; Soha Hassoun; Kyongbum Lee (BMC Syst. Biol., 2015)

PreProPath: An Uncertainty-Aware Algorithm for Identifying Predictable Profitable Pathways in Biochemical Networks. - Ehsan Ullah; Mark Walker; Kyongbum Lee; Soha Hassoun (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

A design study to identify inconsistencies in kinship information: The case of the 1000 Genomes project. - Michaël Aupetit 001; Ehsan Ullah; Reda Rawi; Halima Bensmail (PacificVis, 2016)

Statistical and Network Analysis of Metabolomics Data. - Ehsan Ullah; Raghvendra Mall; Reda Rawi; Halima Bensmail (BCB, 2016)

COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator. - Reda Rawi; Raghvendra Mall; Khalid Kunji; Mohammed El Anbari; Michaël Aupetit 001; Ehsan Ullah; Halima Bensmail (BMC Bioinform., 2016)

gEFM: An Algorithm for Computing Elementary Flux Modes Using Graph Traversal. - Ehsan Ullah; Shuchin Aeron; Soha Hassoun (IEEE ACM Trans. Comput. Biol. Bioinform., 2016)

Differential Community Detection in Paired Biological Networks. - Raghvendra Mall; Ehsan Ullah; Khalid Kunji; Fulvio D'Angelo; Halima Bensmail; Michele Ceccarelli (BCB, 2017)

An adaptive refinement for community detection methods for disease module identification in biological networks using novel metric based on connectivity, conductance & modularity. - Raghvendra Mall; Ehsan Ullah; Khalid Kunji; Halima Bensmail; Michele Ceccarelli (BIBM, 2017)

Identification of cancer drug sensitivity biomarkers. - Ehsan Ullah; Raghvendra Mall; Halima Bensmail; Reda Rawi; Saila Shama; Nooral Al Muftah; Ian Richard Thmpson (BIBM, 2017)

A Review of Privacy and Consent Management in Healthcare: A Focus on Emerging Data Sources. - Muhammad Rizwan Asghar; TzeHowe Lee; Mirza Mansoor Baig; Ehsan Ullah; Giovanni Russello; Gillian Dobbie (eScience, 2017)

Clinical Decision Support for Early Detection of Prediabetes and Type 2 Diabetes Mellitus Using Wearable Technology. - Mirza Mansoor Baig; Farhaan Mirza; Hamid Gholamhosseini; Jairo A. Gutiérrez; Ehsan Ullah (EMBC, 2018)

ISaaC: Identifying Structural Relations in Biological Data with Copula-Based Kernel Dependency Measures. - Hossam Al Meer; Raghvendra Mall; Ehsan Ullah; Nasreddine Megrez; Halima Bensmail (IWBBIO (1), 2018)

GIGI-Quick: a fast approach to impute missing genotypes in genome-wide association family data. - Khalid Kunji; Ehsan Ullah; Alejandro Q. Nato; Ellen M. Wijsman; Mohamad Saad 001 (Bioinform., 2018)

An unsupervised disease module identification technique in biological networks using novel quality metric based on connectivity, conductance and modularity. - Raghvendra Mall; Ehsan Ullah; Khalid Kunji; Michele Ceccarelli; Halima Bensmail (F1000Research, 2018)

Machine Learning-based Risk of Hospital Readmissions: Predicting Acute Readmissions within 30 Days of Discharge. - Mirza Mansoor Baig; Ning Hua; Edmond Zhang; Reece Robinson; Delwyn Armstrong; Robyn Whittaker; Tom Robinson; Farhaan Mirza; Ehsan Ullah (EMBC, 2019)

KinVis: a visualization tool to detect cryptic relatedness in genetic datasets. - Ehsan Ullah; Michaël Aupetit 001; Arun Das 004; Abhishek Patil; Nooral Al Muftah; Reda Rawi; Mohamad Saad 001; Halima Bensmail (Bioinform., 2019)

Beta Exponentiated Modified Weibull Distribution: Properties and Application. - Mirza Naveed Shahzad; Ehsan Ullah; Abid Hussanan (Symmetry, 2019)

GDTF: Generalized Detection Theoretic Framework for T-Wave Alternans Analysis. - Ehsan Ullah; Asim Dilawer Bakhshi; Muhammad Majid (IEEE Access, 2020)

Towards scaling elementary flux mode computation. - Ehsan Ullah; Mona Yosafshahi; Soha Hassoun (Briefings Bioinform., 2020)

A machine learning model for predicting risk of hospital readmission within 30 days of discharge: validated with LACE index and patient at risk of hospital readmission (PARR) model. - Mirza Mansoor Baig; Ning Hua; Edmond Zhang; Reece Robinson; Anna Spyker; Delwyn Armstrong; Robyn Whittaker; Tom Robinson; Ehsan Ullah (Medical Biol. Eng. Comput., 2020)

Early Detection of Prediabetes and T2DM Using Wearable Sensors and Internet-of-Things-Based Monitoring Applications. - Mirza Mansoor Baig; Hamid Gholamhosseini; Jairo A. Gutiérrez; Ehsan Ullah; Maria Lindén (Appl. Clin. Inform., 2021)

A modeling framework for embedding-based predictions for compound-viral protein activity. - Raghvendra Mall; Abdurrahman Elbasir; Hossam Almeer; Zeyaul Islam; Prasanna R. Kolatkar; Sanjay Chawla; Ehsan Ullah (Bioinform., 2021)

ClustRank: a Visual Quality Measure Trained on Perceptual Data for Sorting Scatterplots by Cluster Patterns. - Mostafa M. Abbas; Ehsan Ullah; Abdelkader Baggag; Halima Bensmail; Michael Sedlmair; Michaël Aupetit 001 (CoRR, 2021)

Deep learning based wheat ears count in robot images for wheat phenotyping. - Ehsan Ullah; Mohib Ullah; Muhammad Sajjad; Faouzi Alaya Cheikh (IRIACV, 2022)

Datasets and code for ClustMe and ClustML visual quality measures of grouping patterns in monochrome scatterplots. - Mostafa M. Abbas; Ehsan Ullah; Abdelkader Baggag; Halima Bensmail; Michael Sedlmair; Michaël Aupetit 001 (Zenodo, 2023)

ClustML: A measure of cluster pattern complexity in scatterplots learnt from human-labeled groupings. - Mostafa M. Hamza; Ehsan Ullah; Abdelkader Baggag; Halima Bensmail; Michael Sedlmair; Michaël Aupetit 001 (Inf. Vis., 2024)

PGLM: Piecewise Generalized Linear Modeling of Ventricular Repolarization for Estimation of ECG T-wave Alternans. - Ali Raza; Ehsan Ullah; Kamran Javed; Muhammad Majid; Zubair Saeed (EURASIP J. Adv. Signal Process., 2025)