Protease substrate site predictors derived from machine learning on multilevel substrate phage display data. - Ching-Tai Chen; Ei-Wen Yang; Hung-Ju Hsu; Yi-Kun Sun; Wen-Lian Hsu; An-Suei Yang (Bioinform., 2008)

Differential gene expression analysis using coexpression and RNA-Seq data. - Ei-Wen Yang; Thomas Girke; Tao Jiang 001 (Bioinform., 2013)

GDNorm: An Improved Poisson Regression Model for Reducing Biases in Hi-C Data. - Ei-Wen Yang; Tao Jiang 001 (WABI, 2014)

Accurate inference of isoforms from multiple sample RNA-Seq data. - Masruba Tasnim; Shining Ma; Ei-Wen Yang; Tao Jiang 001; Wei Li 035 (BMC Genom., 2015)

SDEAP: a splice graph based differential transcript expression analysis tool for population data. - Ei-Wen Yang; Tao Jiang 001 (Bioinform., 2016)