The Activity Reaction Core and Plasticity of Metabolic Networks. - Eivind Almaas; Zoltán N. Oltvai; Albert-László Barabási (PLoS Comput. Biol., 2005)

Trend Motif: A Graph Mining Approach for Analysis of Dynamic Complex Networks. - Ruoming Jin; Scott McCallen; Eivind Almaas (ICDM, 2007)

Genetic noise control via protein oligomerization. - Cheol-Min Ghim; Eivind Almaas (BMC Syst. Biol., 2008)

Identifying Dynamic Network Modules with Temporal and Spatial Constraints. - Ruoming Jin; Scott McCallen; Chun-Chi Liu; Yang Xiang; Eivind Almaas; Xianghong Jasmine Zhou (Pacific Symposium on Biocomputing, 2009)

Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach. - Ali Navid; Eivind Almaas (BMC Syst. Biol., 2012)

Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability. - Nikolay Martyushenko; Sigurd Hagen Johansen; Cheol-Min Ghim; Eivind Almaas (BMC Syst. Biol., 2016)

A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma. - André Voigt; Katja Nowick; Eivind Almaas (PLoS Comput. Biol., 2017)

wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool. - Deisy Morselli Gysi; André Voigt; Tiago de Miranda Fragoso; Eivind Almaas; Katja Nowick (BMC Bioinform., 2018)

Automated generation of genome-scale metabolic draft reconstructions based on KEGG. - Emil Karlsen; Christian Schulz 011; Eivind Almaas (BMC Bioinform., 2018)

ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions. - Nikolay Martyushenko; Eivind Almaas (BMC Bioinform., 2019)

Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks. - André Voigt; Eivind Almaas (BMC Bioinform., 2019)

ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models. - Nikolay Martyushenko; Eivind Almaas (Bioinform., 2020)

Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters. - Snorre Sulheim; Fredrik A. Fossheim; Alexander Wentzel; Eivind Almaas (BMC Bioinform., 2021)

Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters. - Snorre Sulheim; Fredrik A. Fossheim; Alexander Wentzel; Eivind Almaas (BMC Bioinform., 2021)

Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. - Christian Schulz 011; Tjasa Kumelj; Emil Karlsen; Eivind Almaas (PLoS Comput. Biol., 2021)

csdR, an R package for differential co-expression analysis. - Jakob P. Pettersen; Eivind Almaas (BMC Bioinform., 2022)

Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts. - Jakob P. Pettersen; Sandra Castillo; Paula Jouhten; Eivind Almaas (BMC Bioinform., 2023)