Somatic point mutations in the p53 gene of human tumors and cell lines: updated compilation. - M. Hollstein; Benny Shomer; M. Greenblatt; Thierry Soussi; Eivind Hovig; R. Montesano; C. C. Harris (Nucleic Acids Res., 1996)

Database of p53 gene somatic mutations in human tumors and cell lines: updated compilation and future prospects. - Pierre Hainaut; Thierry Soussi; Benny Shomer; M. Hollstein; M. Greenblatt; Eivind Hovig; C. C. Harris; R. Montesano (Nucleic Acids Res., 1997)

Towards Knowledge Discovery from cDNA Microarray Gene Expression Data. - Henryk Jan Komorowski; Torgeir R. Hvidsten; Tor-Kristian Jenssen; Dyre Tjeldvoll; Eivind Hovig; Arne K. Sandvik; Astrid Lægreid (PKDD, 2000)

MArray: analysing single, replicated or reversed microarray experiments. - Junbai Wang; Vigdis Nygaard; Birgitte Smith-Sørensen; Eivind Hovig; Ola Myklebost (Bioinform., 2002)

MGraph: graphical models for microarray data analysis. - Junbai Wang; Ola Myklebost; Eivind Hovig (Bioinform., 2003)

Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data. - Junbai Wang; Trond Hellem Bø; Inge Jonassen; Ola Myklebost; Eivind Hovig (BMC Bioinform., 2003)

FigSearch: Using Maximum Entropy Classifier to Categorize Biological Figures. - Fang Liu; Tor-Kristian Jenssen; Vegard Nygaard; John Sack; Eivind Hovig (CSB, 2004)

FigSearch: a figure legend indexing and classification system. - Fang Liu; Tor-Kristian Jenssen; Vegard Nygaard; John Sack; Eivind Hovig (Bioinform., 2004)

Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles. - Eivind Tøstesen; Geir Ivar Jerstad; Eivind Hovig (Nucleic Acids Res., 2005)

The Human Genomic Melting Map. - Fang Liu; Eivind Tøstesen; Jostein K. Sundet; Tor-Kristian Jenssen; Christoph Bock; Geir Ivar Jerstad; William G. Thilly; Eivind Hovig (PLoS Comput. Biol., 2007)

The mathematics of tanning. - Josef Thingnes; Leiv Øyehaug; Eivind Hovig; Stig W. Omholt (BMC Syst. Biol., 2009)

Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation. - Marco Pedicini; Fredrik Barrenäs; Trevor Clancy; Filippo Castiglione; Eivind Hovig; Kartiek Kanduri; Daniele Santoni; Mikael Benson (PLoS Comput. Biol., 2010)

Identifying elemental genomic track types and representing them uniformly. - Sveinung Gundersen; Matús Kalas; Osman Abul; Arnoldo Frigessi; Eivind Hovig; Geir Kjetil Sandve (BMC Bioinform., 2011)

Towards a quantitative understanding of the MITF-PIAS3-STAT3 connection. - Josef Thingnes; Timothy J. Lavelle; Arne B. Gjuvsland; Stig W. Omholt; Eivind Hovig (BMC Syst. Biol., 2012)

The Genomic HyperBrowser: an analysis web server for genome-scale data. - Geir Kjetil Sandve; Sveinung Gundersen; Morten Johansen; Ingrid Kristine Glad; Krishanthi Gunathasan; Lars Holden; Marit Holden; Knut Liestøl; Ståle Nygård; Vegard Nygaard; Jonas Paulsen; Halfdan Rydbeck; et al. (Nucleic Acids Res., 2013)

Pathway analysis of genetic markers associated with a functional MRI faces paradigm implicates polymorphisms in calcium responsive pathways. - Morten Mattingsdal; Andrew Anand Brown; Srdjan Djurovic; Ida Elken Sønderby; Andres Server; Ingrid Melle; Ingrid Agartz; Eivind Hovig; Jimmy Jensen; Ole A. Andreassen (NeuroImage, 2013)

Ten Simple Rules for Reproducible Computational Research. - Geir Kjetil Sandve; Anton Nekrutenko; James Taylor 001; Eivind Hovig (PLoS Comput. Biol., 2013)

HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization. - Jonas Paulsen; Geir Kjetil Sandve; Sveinung Gundersen; Tonje Lien; Kai Trengereid; Eivind Hovig (Bioinform., 2014)

Identifying pathogenic processes by integrating microarray data with prior knowledge. - Ståle Nygård; Trond Reitan; Trevor Clancy; Vegard Nygaard; Johannes Bjørnstad; Biljana Skrbic; Theis Tønnessen; Geir Christensen; Eivind Hovig (BMC Bioinform., 2014)

Standing Together for Reproducibility in Large-Scale Computing: Report on reproducibility@XSEDE. - Doug James; Nancy Wilkins-Diehr; Victoria Stodden; Dirk Colbry; Carlos Rosales; Mark R. Fahey; Justin Shi; Rafael Ferreira da Silva; Kyo Lee; Ralph Roskies; Laurence Loewe; Susan Lindsey; et al. (CoRR, 2014)

Galaxy Portal: interacting with the galaxy platform through mobile devices. - Claus Børnich; Ivar Grytten; Eivind Hovig; Jonas Paulsen; Martin Cech; Geir Kjetil Sandve (Bioinform., 2016)

Profiling networks of distinct immune-cells in tumors. - Trevor Clancy; Eivind Hovig (BMC Bioinform., 2016)

The rainfall plot: its motivation, characteristics and pitfalls. - Diana Domanska; Daniel Vodák; Christin Lund-Andersen; Stefania Salvatore; Eivind Hovig; Geir Kjetil Sandve (BMC Bioinform., 2017)

Filesystem Front-end for Seamless Job Management in Sensitive Data e-Infrastructures and Cloud Federation. - Abdulrahman Azab; Hein Meling; Eivind Hovig; Antti Pursula (IEEE BigData, 2018)

Personal Cancer Genome Reporter: variant interpretation report for precision oncology. - Sigve Nakken; Ghislain Fournous; Daniel Vodák; Lars Birger Aasheim; Ola Myklebost; Eivind Hovig (Bioinform., 2018)

A data-supported history of bioinformatics tools. - Clément Levin; Emeric Dynomant; Bruno J. Gonzalez; Laurent Mouchard; David Landsman; Eivind Hovig; Kristian Vlahovicek (CoRR, 2018)

Norwegian e-Infrastructure for Life Sciences (NeLS). - Kidane M. Tekle; Sveinung Gundersen; Kjetil Klepper; Lars Ailo Bongo; Inge Alexander Raknes; Xiaxi Li; Wei Zhang; Christian Andreetta; Teshome Dagne Mulugeta; Matús Kalas; Morten B. Rye; Erik Hjerde; et al. (F1000Research, 2018)

Colocalization analyses of genomic elements: approaches, recommendations and challenges. - Chakravarthi Kanduri; Christoph Bock; Sveinung Gundersen; Eivind Hovig; Geir Kjetil Sandve (Bioinform., 2019)

The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research. - David Salgado; Irina M. Armean; Michael Baudis; Sergi Beltran; Salvador Capella-Gutiérrez; Denise Carvalho-Silva; Victoria Dominguez Del Angel; Joaquín Dopazo; Laura I. Furlong; Bo Gao; Leyla Jael García Castro; Dietlind Gerloff; et al. (F1000Research, 2020)

MirGeneDB 2.0: the metazoan microRNA complement. - Bastian Fromm; Diana Domanska; Eirik Høye; Vladimir Ovchinnikov; Wenjing Kang; Ernesto Aparicio-Puerta; Morten Johansen; Kjersti Flatmark; Anthony Mathelier; Eivind Hovig; Michael Hackenberg; Marc R. Friedländer; et al. (Nucleic Acids Res., 2020)

The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. - Milena Pavlovic; Lonneke Scheffer; Keshav Motwani; Chakravarthi Kanduri; Radmila Kompova; Nikolay Vazov; Knut Waagan; Fabian L. M. Bernal; Alexandre Almeida Costa; Brian Corrie; Rahmad Akbar; Ghadi S. Al Hajj; et al. (Nat. Mach. Intell., 2021)

MirGeneDB 2.1: toward a complete sampling of all major animal phyla. - Bastian Fromm; Eirik Høye; Diana Domanska; Xiangfu Zhong; Ernesto Aparicio-Puerta; Vladimir Ovchinnikov; Sinan U. Umu; Peter J. Chabot; Wenjing Kang; Morteza Aslanzadeh; Marcel Tarbier; Emilio Mármol-Sánchez; et al. (Nucleic Acids Res., 2022)

screenwerk: a modular tool for the design and analysis of drug combination screens. - Robert Hanes; Pilar Ayuda-Durán; Leiv Rønneberg; Sigve Nakken; Eivind Hovig; Manuela Zucknick; Jorrit M. Enserink (Bioinform., 2023)

TrialMatchAI: An End-to-End AI-powered Clinical Trial Recommendation System to Streamline Patient-to-Trial Matching. - Majd Abdallah; Sigve Nakken; Mariska Bierkens; Johanna Galvis; Alexis Groppi; Slim Karkar; Lana Meiqari; Maria Alexandra Rujano; Steve Canham; Rodrigo Dienstmann; Remond J. A. Fijneman; Eivind Hovig; et al. (CoRR, 2025)