Prediction of potential C/EBP/NF-kappaB composite elements using matrix-based search methods. - Ekaterina Shelest; Alexander E. Kel; Ellen Gößling; Edgar Wingender (Silico Biol., 2003)

Evaluating phylogenetic footprinting for human-rodent comparisons. - Tilman Sauer; Ekaterina Shelest; Edgar Wingender (Bioinform., 2006)

DistanceScan: a tool for promoter modeling. - Vladimir Shelest; Daniela Albrecht; Ekaterina Shelest (Bioinform., 2010)

SiTaR: a novel tool for transcription factor binding site prediction. - Eugen Fazius; Vladimir Shelest; Ekaterina Shelest (Bioinform., 2011)

Motif-Based Method for the Genome-Wide Prediction of Eukaryotic Gene Clusters. - Thomas Wolf 001; Vladimir Shelest; Ekaterina Shelest (ICIAP Workshops, 2013)

CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes. - Thomas Wolf 001; Vladimir Shelest; Neetika Nath; Ekaterina Shelest (Bioinform., 2016)

antiSMASH 4.0 - improvements in chemistry prediction and gene cluster boundary identification. - Kai Blin; Thomas Wolf 001; Marc G. Chevrette; Xiaowen Lu; Christopher J. Schwalen; Satria A. Kautsar; Hernando G. Suarez Duran; Emmanuel L. C. de los Santos; Hyun Uk Kim; Mariana Nave; Jeroen S. Dickschat; Douglas A. Mitchell; et al. (Nucleic Acids Res., 2017)