eTOX ALLIES: an automated pipeLine for linear interaction energy-based simulations. - Luigi Capoferri; Marc van Dijk; Ariën S. Rustenburg; Tsjerk A. Wassenaar; Derk P. Kooi; Eko Aditya Rifai; Nico P. E. Vermeulen; Daan P. Geerke (J. Cheminformatics, 2017)

Binding free energy predictions of farnesoid X receptor (FXR) agonists using a linear interaction energy (LIE) approach with reliability estimation: application to the D3R Grand Challenge 2. - Eko Aditya Rifai; Marc van Dijk; Nico P. E. Vermeulen; Daan P. Geerke (J. Comput. Aided Mol. Des., 2018)

A Comparative Linear Interaction Energy and MM/PBSA Study on SIRT1-Ligand Binding Free Energy Calculation. - Eko Aditya Rifai; Marc van Dijk; Nico P. E. Vermeulen; Arry Yanuar; Daan P. Geerke (J. Chem. Inf. Model., 2019)