QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks. - Asa Thibodeau; Eladio J. Márquez; Oscar Luo; Yijun Ruan; Francesca Menghi; Dong-Guk Shin; Michael L. Stitzel; Paola Vera-Licona; Duygu Ucar (PLoS Comput. Biol., 2016)

V-SVA: an R Shiny application for detecting and annotating hidden sources of variation in single-cell RNA-seq data. - Nathan Lawlor; Eladio J. Márquez; Donghyung Lee; Duygu Ucar (Bioinform., 2020)