Benchmark problems for dynamic modeling of intracellular processes. - Helge Hass; Carolin Loos; Elba Raimúndez-Álvarez; Jens Timmer; Jan Hasenauer; Clemens Kreutz (Bioinform., 2019)

Model-based analysis of response and resistance factors of cetuximab treatment in gastric cancer cell lines. - Elba Raimúndez-Álvarez; Simone Keller; Gwen Zwingenberger; Karolin Ebert; Sabine Hug; Fabian J. Theis; Dieter Maier; Birgit Luber; Jan Hasenauer (PLoS Comput. Biol., 2020)

PEtab - Interoperable specification of parameter estimation problems in systems biology. - Leonard Schmiester; Yannik Schälte; Frank T. Bergmann; Tacio Camba; Erika Dudkin; Janine Egert; Fabian Fröhlich; Lara Fuhrmann; Adrian L. Hauber; Svenja Kemmer; Polina A. Lakrisenko; Carolin Loos; et al. (PLoS Comput. Biol., 2021)

Assessment of Prediction Uncertainty Quantification Methods in Systems Biology. - Alejandro F. Villaverde; Elba Raimúndez-Álvarez; Jan Hasenauer; Julio R. Banga (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

pyPESTO: a modular and scalable tool for parameter estimation for dynamic models. - Yannik Schälte; Fabian Fröhlich; Paul J. Jost; Jakob Vanhoefer; Dilan Pathirana; Paul Stapor; Polina A. Lakrisenko; Dantong Wang; Elba Raimúndez-Álvarez; Simon Merkt; Leonard Schmiester; Philipp Städter; et al. (Bioinform., 2023)