Conservation of regulatory elements between two species of Drosophila. - Eldon Emberly; Nikolaus Rajewsky; Eric D. Siggia (BMC Bioinform., 2003)

Chromosome Driven Spatial Patterning of Proteins in Bacteria. - Saeed Saberi; Eldon Emberly (PLoS Comput. Biol., 2010)

CHROMATRA: a Galaxy tool for visualizing genome-wide chromatin signatures. - Thomas Hentrich; Julia M. Schulze; Eldon Emberly; Michael S. Kobor (Bioinform., 2012)

Probing long-range interactions by extracting free energies from genome-wide chromosome conformation capture data. - Saeed Saberi; Pau Farré; Olivier Cuvier; Eldon Emberly (BMC Bioinform., 2015)

Operational Principles for the Dynamics of the In Vitro ParA-ParB System. - Lavisha Jindal; Eldon Emberly (PLoS Comput. Biol., 2015)

A maximum-entropy model for predicting chromatin contacts. - Pau Farré; Eldon Emberly (PLoS Comput. Biol., 2018)