MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms. - Amira Djebbari; Svetlana Karamycheva; Eleanor Howe; John Quackenbush (Bioinform., 2005)

RNA-Seq analysis in MeV. - Eleanor Howe; Raktim Sinha; Daniel Schlauch; John Quackenbush (Bioinform., 2011)

nEASE: a method for gene ontology subclassification of high-throughput gene expression data. - Thomas W. Chittenden; Eleanor Howe; Jennifer M. Taylor; Jessica Cara Mar; Martin J. Aryee; Harold Gómez; Razvan Sultana; John C. Braisted; Sarita J. Nair; John Quackenbush; Chris Holmes (Bioinform., 2012)

iBBiG: iterative binary bi-clustering of gene sets. - Daniel Gusenleitner; Eleanor Howe; Stefan Bentink; John Quackenbush; Aedín C. Culhane (Bioinform., 2012)