Scalable and Accurate Phylogenetic Placement Using pplacer-XR. - Eleanor Wedell; Yirong Cai; Tandy J. Warnow (AlCoB, 2021)

Center-Periphery Structure in Communities: Extracellular Vesicles. - Eleanor Wedell; Minhyuk Park; Dmitriy Korobskiy; Tandy J. Warnow; George Chacko (CoRR, 2021)

Center-periphery structure in research communities. - Eleanor Wedell; Minhyuk Park; Dmitriy Korobskiy; Tandy J. Warnow; George Chacko (Quant. Sci. Stud., 2022)

BATCH-SCAMPP: Scaling Phylogenetic Placement Methods to Place Many Sequences (Abstract). - Eleanor Wedell; Chengze Shen; Tandy J. Warnow (WABI, 2023)

SCAMPP: Scaling Alignment-Based Phylogenetic Placement to Large Trees. - Eleanor Wedell; Yirong Cai; Tandy J. Warnow (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

FastEnsemble: A new scalable ensemble clustering method. - Yasamin Tabatabaee; Eleanor Wedell; Minhyuk Park; Tandy J. Warnow (CoRR, 2024)

TIPP3 and TIPP3-fast: Improved abundance profiling in metagenomics. - Chengze Shen; Eleanor Wedell; Mihai Pop; Tandy J. Warnow (PLoS Comput. Biol., 2025)