A Galaxy Workflow for the Functional Annotation of Metagenomic Samples. - Eleftherios Pilalis; Eythymios Ladoukakis; Fragiskos N. Kolisis; Aristotelis Chatziioannou (SETN, 2012)

Prediction of enzymatic activity of proteins based on structural and functional domains. - Theodoros Koutsandreas; Eleftherios Pilalis; Aristotelis A. Chatziioannou (BIBE, 2013)

Prioritized functional analysis of biological experiments using resampling and noise control methodologies. - Eleftherios Pilalis; Aristotelis Chatziioannou (BIBE, 2013)

A Machine-Learning Approach for theof Enzymatic Activity of Proteins in Metagenomic Samples. - Theodoros Koutsandreas; Eleftherios Pilalis; Aristotelis Chatziioannou (AIAI, 2013)

Making sense of the biological complexity through the platform-driven unification of the analytical and visualization tasks. - Theodoras Koutsandreas; Eleftherios Pilalis; Efstathios Iason Vlachavas; Dirk Koczan; Sven Klippel; Antonia Dimitrakopoulou-Strauss; Ioannis Valavanis; Aristotelis Chatziioannou (BIBE, 2015)

Analyzing and Visualizing Genomic Complexity for the Derivation of the Emergent Molecular Networks. - Theodoros Koutsandreas; Ilona Binenbaum; Eleftherios Pilalis; Ioannis Valavanis; Olga Papadodima; Aristotelis Chatziioannou (Int. J. Monit. Surveillance Technol. Res., 2016)

Combining Pathway Analysis and Supervised Machine Learning for the Functional Classification of Single-Cell Transcriptomic Data. - Theodoris Koutsandreas; Ajdini Bajram; Chara Mastrokalou; Eleftherios Pilalis; Aristotelis Chatziioannou; Ilias Maglogiannis (BIBE, 2019)

RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis. - Vidisha Singh; George D. Kalliolias; Marek Ostaszewski; Maëva Veyssiere; Eleftherios Pilalis; Piotr Gawron; Alexander Mazein; Eric Bonnet; Elisabeth Petit-Teixeira; Anna Niarakis (Database J. Biol. Databases Curation, 2020)