Towards an Upper-Level Ontology for Molecular Biology. - Stefan Schulz 001; Elena Beisswanger; Joachim Wermter; Udo Hahn (AMIA, 2006)

From GENIA to BIOTOP - Towards a Top-Level Ontology for Biology. - Stefan Schulz 001; Elena Beisswanger; Udo Hahn; Joachim Wermter; Anand Kumar 005; Holger Stenzhorn (FOIS, 2006)

An Ontology for Major Histocompatibility Complex (MHC) Alleles and Molecules. - Elena Beisswanger; David S. DeLuca; Rainer Blasczyk; Udo Hahn (AMIA, 2007)

Towards a Top-Domain Ontology for Linking Biomedical Ontologies. - Holger Stenzhorn; Elena Beisswanger; Stefan Schulz 001 (MedInfo, 2007)

Building a BioWordNet Using WordNet Data Structures and WordNet's Software Infrastructure-A Failure Story. - Michael Poprat; Elena Beisswanger; Udo Hahn (SETQALNLP, 2008)

WordNet-Inspired Terminological Resources for Bio-NLP. - Elena Beisswanger; Michael Poprat; Udo Hahn (Ontologies and Text Mining for Life Sciences, 2008)

Semantic Annotations for Biology: a Corpus Development Initiative at the Jena University Language & Information Engineering (JULIE) Lab. - Udo Hahn; Elena Beisswanger; Ekaterina Buyko; Michael Poprat; Katrin Tomanek; Joachim Wermter (LREC, 2008)

Gene Regulation Ontology (GRO): Design Principles and Use Cases. - Elena Beisswanger; Vivian Lee; Jung-Jae Kim 001; Dietrich Rebholz-Schuhmann; Andrea Splendiani; Olivier Dameron; Stefan Schulz 001; Udo Hahn (MIE, 2008)

BioTop and ChemTop - Top-Domain Ontologies for Biology and Chemistry. - Holger Stenzhorn; Stefan Schulz 001; Elena Beisswanger; Udo Hahn; László van den Hoek; Erik M. van Mulligen (ISWC (Posters & Demos), 2008)

BioTop: An upper domain ontology for the life sciencesA description of its current structure, contents and interfaces to OBO ontologies. - Elena Beisswanger; Stefan Schulz 001; Holger Stenzhorn; Udo Hahn (Appl. Ontology, 2008)

MaHCO: an ontology of the major histocompatibility complex for immunoinformatic applications and text mining. - David S. DeLuca; Elena Beisswanger; Joachim Wermter; Peter A. Horn; Udo Hahn; Rainer Blasczyk (Bioinform., 2009)

Alignment of the UMLS semantic network with BioTop: methodology and assessment. - Stefan Schulz 001; Elena Beisswanger; László van den Hoek; Olivier Bodenreider; Erik M. van Mulligen (Bioinform., 2009)

A Proposal for a Configurable Silver Standard. - Udo Hahn; Katrin Tomanek; Elena Beisswanger; Erik Faessler (Linguistic Annotation Workshop, 2010)

The GeneReg Corpus for Gene Expression Regulation Events - An Overview of the Corpus and its In-Domain and Out-of-Domain Interoperability. - Ekaterina Buyko; Elena Beisswanger; Udo Hahn (LREC, 2010)

The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers. - Dietrich Rebholz-Schuhmann; Antonio José Jimeno-Yepes; Erik M. van Mulligen; Ning Kang 002; Jan A. Kors; David Milward; Peter T. Corbett; Ekaterina Buyko; Katrin Tomanek; Elena Beisswanger; Udo Hahn (LREC, 2010)

Aligning UniProt and MeSH - A Case Study on Human Protein Terms. - Elena Beisswanger; Joachim Wermter; Udo Hahn (MedInfo, 2010)

Exploiting Relation Extraction for Ontology Alignment. - Elena Beisswanger (ISWC (2), 2010)

Calbc Silver Standard Corpus. - Dietrich Rebholz-Schuhmann; Antonio Jimeno-Yepes; Erik M. van Mulligen; Ning Kang 002; Jan A. Kors; David Milward; Peter T. Corbett; Ekaterina Buyko; Elena Beisswanger; Udo Hahn (J. Bioinform. Comput. Biol., 2010)

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. - Dietrich Rebholz-Schuhmann; Antonio Jimeno-Yepes; Chen Li 011; Senay Kafkas; Ian Lewin; Ning Kang 002; Peter T. Corbett; David Milward; Ekaterina Buyko; Elena Beisswanger; Kerstin Hornbostel; Alexandre Kouznetsov; et al. (J. Biomed. Semant., 2011)

Active Learning-Based Corpus Annotation - The PathoJen Experience. - Udo Hahn; Elena Beisswanger; Ekaterina Buyko; Erik Faessler (AMIA, 2012)

Iterative Refinement and Quality Checking of Annotation Guidelines - How to Deal Effectively with Semantically Sloppy Named Entity Types, such as Pathological Phenomena. - Udo Hahn; Elena Beisswanger; Ekaterina Buyko; Erik Faessler; Jenny Traumüller; Susann Schröder; Kerstin Hornbostel (LREC, 2012)

The Extraction of Pharmacogenetic and Pharmacogenomic Relations - A Case Study Using PharmGKB. - Ekaterina Buyko; Elena Beisswanger; Udo Hahn (Pacific Symposium on Biocomputing, 2012)

Towards valid and reusable reference alignments - ten basic quality checks for ontology alignments and their application to three different reference data sets. - Elena Beisswanger; Udo Hahn (J. Biomed. Semant., 2012)

Developing Ontological Background Knowledge for Biomedicine. - Anna Elena Beißwanger (2013)