Two genetic algorithms for identification of regulatory signals. - Elena D. Stavrovskaya; Andrey A. Mironov (Silico Biol., 2003)

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. - Pavel S. Novichkov; Dmitry A. Rodionov; Elena D. Stavrovskaya; Elena S. Novichkova; Alexei E. Kazakov; Mikhail S. Gelfand; Adam P. Arkin; Andrey A. Mironov; Inna Dubchak (Nucleic Acids Res., 2010)

Automated Regulon Content Prediction and Estimation of PWM Quality. - Elena D. Stavrovskaya; Andrey A. Mironov; Dmitry A. Rodionov; Inna Dubchak; Pavel S. Novichkov (BIOINFORMATICS, 2012)

Fast assessment of the correlation between coverage-like genomic features and its statistical significance. - Elena D. Stavrovskaya; Andrey A. Mironov; Alexander V. Favorov (IWBBIO, 2013)

StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data. - Elena D. Stavrovskaya; Tejasvi Niranjan; Elana J. Fertig; Sarah J. Wheelan; Alexander V. Favorov; Andrey A. Mironov (Bioinform., 2017)