Understanding the application of knowledge management to the safety critical facilities. - Elena Ilina (2010)

Social Event Detection on Twitter. - Elena Ilina; Claudia Hauff; Ilknur Celik; Fabian Abel; Geert-Jan Houben (ICWE, 2012)

Mining Twitter for Cultural Patterns. - Elena Ilina; Fabian Abel; Geert-Jan Houben (MuC (Workshopband), 2012)

Large scale analysis of amino acid substitutions in bacterial proteomics. - Dmitry S. Ischenko; Dmitry G. Alexeev; Egor Shitikov; Alexandra Kanygina; Maja Malakhova; Elena S. Kostryukova; Andrey Larin; Sergey Kovalchuk; Olga Pobeguts; Ivan Butenko; Nikolay A. Kolchanov; Ilya A. Altukhov; et al. (BMC Bioinform., 2016)

VERA: agent-based modeling transmission of antibiotic resistance between human pathogens and gut microbiota. - Oksana E. Glushchenko; Nikita A. Prianichnikov; Evgenii I Olekhnovich; Alexander I Manolov; Alexander V. Tyakht; Elizaveta V. Starikova; Vera Odintsova; Elena S. Kostryukova; Elena Ilina (Bioinform., 2019)

Phigaro: high-throughput prophage sequence annotation. - Elizaveta V. Starikova; Polina O. Tikhonova; Nikita A. Prianichnikov; Chris M. Rands; Evgeny M. Zdobnov; Elena N. Ilina; Vadim M. Govorun (Bioinform., 2020)

Genome Complexity Browser: Visualization and quantification of genome variability. - Alexander I Manolov; Dmitry Konanov; Dmitry V. Fedorov; Ivan Osmolovsky; Rinat Vereshchagin; Elena Ilina (PLoS Comput. Biol., 2020)

Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads. - Dmitry Konanov; Vladislav V. Babenko; Aleksandra M. Belova; Arina G. Madan; Daria I Boldyreva; Oksana E. Glushenko; Ivan Butenko; Dmitry E. Fedorov; Alexander I Manolov; Danil V. Krivonos; Vassili N. Lazarev; Vadim M. Govorun; et al. (Bioinform., 2023)

Bayesian compositional regression with microbiome features via variational inference. - Darren A. V. Scott; Ernest D. Benavente; Julian Libiseller-Egger; Dmitry V. Fedorov; Jody Phelan; Elena Ilina; Polina O. Tikhonova; Alexander Kudryavstev; Julia Galeeva; Taane G. Clark; Alex Lewin (BMC Bioinform., 2023)