Statistics of some Low-Dimensional Chaotic Flows. - Elena S. Dimitrova; Oleg I. Yordanov (Int. J. Bifurc. Chaos, 2001)

Polynomial Models for Systems Biology: Data Discretization and Term Order Effect on Dynamics. - Elena S. Dimitrova (2006)

A Gröbner fan method for biochemical network modeling. - Elena S. Dimitrova; Abdul Salam Jarrah; Reinhard C. Laubenbacher; Brandilyn Stigler (ISSAC, 2007)

Forecasting polynomial dynamics. - Elena S. Dimitrova; Andrew Zardecki (Appl. Math. Comput., 2008)

Applications of the gröbner fan to gene network reconstruction (abstract only). - Elena S. Dimitrova; Brandilyn Stigler; Abdul Salam Jarrah; Reinhard C. Laubenbacher (ACM Commun. Comput. Algebra, 2008)

Discretization of Time Series Data. - Elena S. Dimitrova; Paola Vera-Licona; John McGee; Reinhard C. Laubenbacher (J. Comput. Biol., 2010)

Estimating the Volumes of the Cones in a Gröbner Fan. - Elena S. Dimitrova (Math. Comput. Sci., 2010)

Probabilistic polynomial dynamical systems for reverse engineering of gene regulatory networks. - Elena S. Dimitrova; Indranil Mitra; Abdul Salam Jarrah (EURASIP J. Bioinform. Syst. Biol., 2011)

Parameter estimation for Boolean models of biological networks. - Elena S. Dimitrova; Luis David García-Puente; Franziska Hinkelmann; Abdul Salam Jarrah; Reinhard C. Laubenbacher; Brandilyn Stigler; Michael Eugene Stillman; Paola Vera-Licona (Theor. Comput. Sci., 2011)

Molecular network control through boolean canalization. - David Murrugarra; Elena S. Dimitrova (EURASIP J. Bioinform. Syst. Biol., 2015)

The innate immune response to ischemic injury: a multiscale modeling perspective. - Elena S. Dimitrova; Leslie A. Caromile; Reinhard C. Laubenbacher; Linda H. Shapiro (BMC Syst. Biol., 2018)

PlantSimLab - a modeling and simulation web tool for plant biologists. - S. Ha; Elena S. Dimitrova; Stefan Hoops; Doaa Altarawy; Mitra Ansariola; D. Deb; Jane Glazebrook; R. Hillmer; Hossameldin Shahin; Fumiaki Katagiri; J. McDowell; Molly Megraw; et al. (BMC Bioinform., 2019)

Quantifying the total effect of edge interventions in discrete multistate networks. - David Murrugarra; Elena S. Dimitrova (Autom., 2021)

Algebraic model selection and experimental design in biological data science. - Elena S. Dimitrova; Jingzhen Hu; Qingzhong Liang; Brandilyn Stigler; Anyu Zhang (Adv. Appl. Math., 2022)

Revealing the canalizing structure of Boolean functions: Algorithms and applications. - Elena S. Dimitrova; Brandilyn Stigler; Claus Kadelka; David Murrugarra (Autom., 2022)

Cyclone: open-source package for simulation and analysis of finite dynamical systems. - Elena S. Dimitrova; Adam C. Knapp; Brandilyn Stigler; Michael Eugene Stillman (Bioinform., 2023)

Algebraic Experimental Design: Theory and Computation. - Elena S. Dimitrova; Cameron H. Fredrickson; Nicholas A. Rondoni; Brandilyn Stigler; Alan Veliz-Cuba (SIAM J. Appl. Algebra Geom., 2024)

A Unified Approach to Reverse Engineering and Data Selection for Unique Network Identification. - Alan Veliz-Cuba; Vanessa Newsome-Slade; Elena S. Dimitrova (SIAM J. Appl. Dyn. Syst., 2024)