MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads. - Alexander V. Tyakht; Anna S. Popenko; Maxim S. Belenikin; Ilya A. Altukhov; Alexander V. Pavlenko; Elena S. Kostryukova; Oksana V. Selezneva; Andrei K. Larin; Irina Y. Karpova; Dmitry G. Alexeev (Source Code Biol. Medicine, 2012)

Large scale analysis of amino acid substitutions in bacterial proteomics. - Dmitry S. Ischenko; Dmitry G. Alexeev; Egor Shitikov; Alexandra Kanygina; Maja Malakhova; Elena S. Kostryukova; Andrey Larin; Sergey Kovalchuk; Olga Pobeguts; Ivan Butenko; Nikolay A. Kolchanov; Ilya A. Altukhov; et al. (BMC Bioinform., 2016)

MetaCherchant: analyzing genomic context of antibiotic resistance genes in gut microbiota. - Evgenii I Olekhnovich; Artem T. Vasilyev; Vladimir Ulyantsev; Elena S. Kostryukova; Alexander V. Tyakht (Bioinform., 2018)

VERA: agent-based modeling transmission of antibiotic resistance between human pathogens and gut microbiota. - Oksana E. Glushchenko; Nikita A. Prianichnikov; Evgenii I Olekhnovich; Alexander I Manolov; Alexander V. Tyakht; Elizaveta V. Starikova; Vera Odintsova; Elena S. Kostryukova; Elena Ilina (Bioinform., 2019)