Comparative analysis of methods for representing and searching for transcription factor binding sites. - Robert Osada; Elena Zaslavsky; Mona Singh 001 (Bioinform., 2004)

A Compact Mathematical Programming Formulation for DNA Motif Finding. - Carl Kingsford; Elena Zaslavsky; Mona Singh 001 (CPM, 2006)

A combinatorial optimization approach for diverse motif finding applications. - Elena Zaslavsky; Mona Singh 001 (Algorithms Mol. Biol., 2006)

M are better than one: an ensemble-based motif finder and its application to regulatory element prediction. - Chen Yanover; Mona Singh 001; Elena Zaslavsky (Bioinform., 2009)

The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment. - Stephen F. Altschul; John C. Wootton; Elena Zaslavsky; Yi-Kuo Yu (PLoS Comput. Biol., 2010)

A cost-aggregating integer linear program for motif finding. - Carl Kingsford; Elena Zaslavsky; Mona Singh 001 (J. Discrete Algorithms, 2011)

Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection. - Elena Zaslavsky; German Nudelman; Susanna Marquez; Uri Hershberg; Boris M. Hartmann; Juilee Thakar; Stuart C. Sealfon; Steven H. Kleinstein (BMC Bioinform., 2013)

CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations. - Maria D. Chikina; Elena Zaslavsky; Stuart C. Sealfon (Bioinform., 2015)

Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data. - Xi Chen; Yuan Wang 084; Antonio Cappuccio; Wan-Sze Cheng; Frederique Ruf Zamojski; Venugopalan D. Nair; Clare M. Miller; Aliza B. Rubenstein; German Nudelman; Alicja Tadych; Chandra L. Theesfeld; Alexandria Vornholt; et al. (Nat. Comput. Sci., 2023)

Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data. - Xi Chen; Yuan Wang 084; Antonio Cappuccio; Wan-Sze Cheng; Frederique Ruf Zamojski; Venugopalan D. Nair; Clare M. Miller; Aliza B. Rubenstein; German Nudelman; Alicja Tadych; Chandra L. Theesfeld; Alexandria Vornholt; et al. (Nat. Comput. Sci., 2023)