GenoSNP: a variational Bayes within-sample SNP genotyping algorithm that does not require a reference population. - Eleni Giannoulatou; Christopher Yau; Stefano Colella; Jiannis Ragoussis; Christopher C. Holmes (Bioinform., 2008)

Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie. - Eleni Giannoulatou; Shin-Ho Park; David T. Humphreys; Joshua Wing Kei Ho (BMC Bioinform., 2014)

A cloud-based framework for applying metamorphic testing to a bioinformatics pipeline. - Michael Troup; Andrian Yang; Amir Hossein Kamali; Eleni Giannoulatou; Tsong Yueh Chen; Joshua Wing Kei Ho (MET@ICSE, 2016)

SVPV: a structural variant prediction viewer for paired-end sequencing datasets. - Jacob E. Munro; Sally L. Dunwoodie; Eleni Giannoulatou (Bioinform., 2017)

Spliceogen: an integrative, scalable tool for the discovery of splice-altering variants. - Steven Monger; Michael Troup; Eddie Ip; Sally L. Dunwoodie; Eleni Giannoulatou (Bioinform., 2019)

VPOT: A Customizable Variant Prioritization Ordering Tool for Annotated Variants. - Eddie Ip; Gavin Chapman; David S. Winlaw; Sally L. Dunwoodie; Eleni Giannoulatou (Genom. Proteom. Bioinform., 2019)

dv-trio: a family-based variant calling pipeline using DeepVariant. - Eddie Ip; Clinton Hadinata; Joshua Wing Kei Ho; Eleni Giannoulatou (Bioinform., 2020)

ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole-genome sequencing data. - Mikhail Gudkov; Loïc Thibaut; Matloob Khushi; Gillian M. Blue; David S. Winlaw; Sally L. Dunwoodie; Eleni Giannoulatou (BMC Bioinform., 2023)