Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT. - Shahab Sarmashghi; Metin Balaban; Eleonora Rachtman; Behrouz Touri; Siavash Mirarab; Vineet Bafna (PLoS Comput. Biol., 2021)

Uncertainty Quantification Using Subsampling for Assembly-Free Estimates of Genomic Distance and Phylogenetic Relationships. - Eleonora Rachtman; Shahab Sarmashghi; Vineet Bafna; Siavash Mirarab (RECOMB, 2022)

CONSULT-II: Taxonomic Identification Using Locality Sensitive Hashing. - Ali Osman Berk Sapci; Eleonora Rachtman; Siavash Mirarab (RECOMB-CG, 2023)