Multiple structural alignment and clustering of RNA sequences. - Elfar Torarinsson; Jakob Hull Havgaard; Jan Gorodkin (Bioinform., 2007)

Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix. - Jakob Hull Havgaard; Elfar Torarinsson; Jan Gorodkin (PLoS Comput. Biol., 2007)

WAR: Webserver for aligning structural RNAs. - Elfar Torarinsson; Stinus Lindgreen (Nucleic Acids Res., 2008)

Multiperm: shuffling multiple sequence alignments while approximately preserving dinucleotide frequencies. - Parvez Anandam; Elfar Torarinsson; Walter L. Ruzzo (Bioinform., 2009)

Structural profiles of human miRNA families from pairwise clustering. - Bogumil Kaczkowski; Elfar Torarinsson; Kristin Reiche; Jakob Hull Havgaard; Peter F. Stadler; Jan Gorodkin (Bioinform., 2009)