CoPAP: Coevolution of Presence-Absence Patterns. - Ofir Cohen; Haim Ashkenazy; Eli Levy Karin; David Burstein; Tal Pupko (Nucleic Acids Res., 2013)

SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm. - Haim Ashkenazy; Eli Levy Karin; Zach Mertens; Reed A. Cartwright; Tal Pupko (Nucleic Acids Res., 2017)

TraitRateProp: a web server for the detection of trait-dependent evolutionary rate shifts in sequence sites. - Eli Levy Karin; Haim Ashkenazy; Susann Wicke; Tal Pupko; Itay Mayrose (Nucleic Acids Res., 2017)

Fast and sensitive taxonomic assignment to metagenomic contigs. - Milot Mirdita; Martin Steinegger; Florian P. Breitwieser; Johannes Söding; Eli Levy Karin (Bioinform., 2021)

SpacePHARER: sensitive identification of phages from CRISPR spacers in prokaryotic hosts. - Ruoshi Zhang; Milot Mirdita; Eli Levy Karin; Clovis Norroy; Clovis Galiez; Johannes Söding (Bioinform., 2021)