Reverse engineering of a mechanistic model of gene expression using metastability and temporal dynamics. - Elias Ventre (Silico Biol., 2020)

Convergence of the Sinkhorn algorithm when the Schrödinger problem has no solution. - Aymeric Baradat; Elias Ventre (CoRR, 2022)

One model fits all: Combining inference and simulation of gene regulatory networks. - Elias Ventre; Ulysse Herbach; Thibault Espinasse; Gérard Benoit; Olivier Gandrillon (PLoS Comput. Biol., 2023)