Convolutional Neural Networks for Classification of Alzheimer's Disease: Overview and Reproducible Evaluation. - Junhao Wen 002; Elina Thibeau-Sutre; Jorge Samper-González; Alexandre Routier; Simona Bottani; Stanley Durrleman; Ninon Burgos; Olivier Colliot (CoRR, 2019)

Visualization approach to assess the robustness of neural networks for medical image classification. - Elina Thibeau-Sutre; Olivier Colliot; Didier Dormont; Ninon Burgos (Image Processing, 2020)

Convolutional neural networks for classification of Alzheimer's disease: Overview and reproducible evaluation. - Junhao Wen 002; Elina Thibeau-Sutre; Mauricio Diaz-Melo; Jorge Samper-González; Alexandre Routier; Simona Bottani; Didier Dormont; Stanley Durrleman; Ninon Burgos; Olivier Colliot (Medical Image Anal., 2020)

Deep learning for brain disorders: from data processing to disease treatment. - Ninon Burgos; Simona Bottani; Johann Faouzi; Elina Thibeau-Sutre; Olivier Colliot (Briefings Bioinform., 2021)

Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies. - Alexandre Routier; Ninon Burgos; Mauricio Diaz-Melo; Michael Bacci; Simona Bottani; Omar El-Rifai; Sabrina Fontanella; Pietro Gori; Jérémy Guillon; Alexis Guyot; Ravi Hassanaly; Thomas Jacquemont; et al. (Frontiers Neuroinformatics, 2021)

Predicting the progression of mild cognitive impairment using machine learning: A systematic, quantitative and critical review. - Manon Ansart; Stéphane Epelbaum; Giulia Bassignana; Alexandre Bône; Simona Bottani; Tiziana Cattai; Raphaël Couronné; Johann Faouzi; Igor Koval; Maxime Louis; Elina Thibeau-Sutre; Junhao Wen 002; et al. (Medical Image Anal., 2021)

Reproducible and interpretable deep learning for the diagnosis, prognosis and subtyping of Alzheimer's disease from neuroimaging data. (Méthodes d'apprentissage profond reproductibles et interprétables pour le diagnostic, le pronostic et l'identification de sous-groupes de la maladie d'Alzheimer à partir de données de neuroimagerie). - Elina Thibeau-Sutre (2021)

MRI Field Strength Predicts Alzheimer's Disease: a Case Example of Bias in the ADNI Data Set. - Elina Thibeau-Sutre; Baptiste Couvy-Duchesne; Didier Dormont; Olivier Colliot; Ninon Burgos (ISBI, 2022)

Homogenization of brain MRI from a clinical data warehouse using contrast-enhanced to non-contrast-enhanced image translation with U-Net derived models. - Simona Bottani; Elina Thibeau-Sutre; Aurélien Maire; Sebastian Ströer; Didier Dormont; Olivier Colliot; Ninon Burgos (Image Processing, 2022)

ClinicaDL: An open-source deep learning software for reproducible neuroimaging processing. - Elina Thibeau-Sutre; Mauricio Diaz-Melo; Ravi Hassanaly; Alexandre Routier; Didier Dormont; Olivier Colliot; Ninon Burgos (Comput. Methods Programs Biomed., 2022)

Interpretability of Machine Learning Methods Applied to Neuroimaging. - Elina Thibeau-Sutre; Sasha Collin; Ninon Burgos; Olivier Colliot (CoRR, 2022)

Reproducibility in machine learning for medical imaging. - Olivier Colliot; Elina Thibeau-Sutre; Ninon Burgos (CoRR, 2022)

Uncertainty-Based Quality Assurance of Carotid Artery Wall Segmentation in Black-Blood MRI. - Elina Thibeau-Sutre; Dieuwertje Alblas; Sophie Buurman; Christoph Brune; Jelmer M. Wolterink (UNSURE@MICCAI, 2023)

How can data augmentation improve attribution maps for disease subtype explainability. - Elina Thibeau-Sutre; Jelmer M. Wolterink; Olivier Colliot; Ninon Burgos (Image Processing, 2023)

Data Augmentation in High Dimensional Low Sample Size Setting Using a Geometry-Based Variational Autoencoder. - Clément Chadebec; Elina Thibeau-Sutre; Ninon Burgos; Stéphanie Allassonnière (IEEE Trans. Pattern Anal. Mach. Intell., 2023)

Brain-Shift: Unsupervised Pseudo-Healthy Brain Synthesis for Novel Biomarker Extraction in Chronic Subdural Hematoma. - Baris Imre; Elina Thibeau-Sutre; Jorieke Reimer; Kuan Kho; Jelmer M. Wolterink (MICCAI (2), 2024)

Contrast-enhanced to non-contrast-enhanced image translation to exploit a clinical data warehouse of T1-weighted brain MRI. - Simona Bottani; Elina Thibeau-Sutre; Aurélien Maire; Sebastian Ströer; Didier Dormont; Olivier Colliot; Ninon Burgos (BMC Medical Imaging, 2024)