meRanTK: methylated RNA analysis ToolKit. - Dietmar Rieder; Thomas Amort; Elisabeth Kugler; Alexandra Lusser; Zlatko Trajanoski (Bioinform., 2016)

Image Analysis in Light Sheet Fluorescence Microscopy Images of Transgenic Zebrafish Vascular Development. - Elisabeth Kugler; Timothy Chico; Paul A. Armitage (MIUA, 2018)

Validating Segmentation of the Zebrafish Vasculature. - Elisabeth Kugler; Timothy Chico; Paul A. Armitage (MIUA, 2019)

Enhancement and Segmentation Workflow for the Developing Zebrafish Vasculature. - Elisabeth Kugler; Karen Plant; Timothy Chico; Paul A. Armitage (J. Imaging, 2019)

Meeting in the Middle: Towards Successful Multidisciplinary Bioimage Analysis Collaboration. - Anjalie Schlaeppi; Wilson Adams; Robert Haase 001; Jan Huisken; Ryan B. Macdonald; Kevin W. Eliceiri; Elisabeth Kugler (Frontiers Bioinform., 2022)