Exploring the Set of All Minimal Sequences of Reversals - An Application to Test the Replication-Directed Reversal Hypothesis. - Yasmine Ajana; Jean-François Lefebvre; Elisabeth R. M. Tillier; Nadia El-Mabrouk (WABI, 2002)

Detection and validation of single gene inversions. - Jean-François Lefebvre; Nadia El-Mabrouk; Elisabeth R. M. Tillier; David Sankoff (ISMB (Supplement of Bioinformatics), 2003)

Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments. - Elisabeth R. M. Tillier; Thomas W. H. Lui (Bioinform., 2003)

A Transition Probability Model for Amino Acid Substitutions from Blocks. - Shalini Veerassamy; Andrew D. Smith; Elisabeth R. M. Tillier (J. Comput. Biol., 2003)

The Distribution of Inversion Lengths in Bacteria. - David Sankoff; Jean-François Lefebvre; Elisabeth R. M. Tillier; Adrian Maler; Nadia El-Mabrouk (Comparative Genomics, 2004)

Genome Rearrangement and Planning. - Esra Erdem 001; Elisabeth R. M. Tillier (AAAI, 2005)

SIMPROT: Using an empirically determined indel distribution in simulations of protein evolution. - Andy Pang; Andrew D. Smith; Paulo A. S. Nuin; Elisabeth R. M. Tillier (BMC Bioinform., 2005)

A Bayesian approach to pairwise RNA Secondary Structure Alignment. - Zhuozhi Wang; Elisabeth R. M. Tillier (CIBCB, 2006)

The accuracy of several multiple sequence alignment programs for proteins. - Paulo A. S. Nuin; Zhouzhi Wang; Elisabeth R. M. Tillier (BMC Bioinform., 2006)

A fast and flexible approach to oligonucleotide probe design for genomes and gene families. - Shengzhong Feng; Elisabeth R. M. Tillier (Bioinform., 2007)

Faster coevolution detection of proteins using maximum similar cliques. - Alex Rodionov; Alexandr Bezginov; Jonathan Rose; Elisabeth R. M. Tillier (BCB, 2010)

A new, fast algorithm for detecting protein coevolution using maximum compatible cliques. - Alex Rodionov; Alexandr Bezginov; Jonathan Rose; Elisabeth R. M. Tillier (Algorithms Mol. Biol., 2011)