Homogenization of Elliptic Difference Operators. - Andrey Piatnitski; Elisabeth Remy (SIAM J. Math. Anal., 2001)

GeneANOVA-gene expression analysis of variance. - Gilles Didier; Pierre Brézellec; Elisabeth Remy; Alain Hénaut (Bioinform., 2002)

A description of dynamical graphs associated to elementary regulatory circuits. - Elisabeth Remy; Brigitte Mossé; Claudine Chaouiya; Denis Thieffry (ECCB, 2003)

Qualitative Analysis of Regulatory Graphs: A Computational Tool Based on a Discrete Formal Framework. - Claudine Chaouiya; Elisabeth Remy; Brigitte Mossé; Denis Thieffry (POSTA, 2003)

Qualitative Modelling of Genetic Networks: From Logical Regulatory Graphs to Standard Petri Nets. - Claudine Chaouiya; Elisabeth Remy; Paul Ruet; Denis Thieffry (ICATPN, 2004)

Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in E.Coli. - E. Simão; Elisabeth Remy; Denis Thieffry; Claudine Chaouiya (ECCB/JBI, 2005)

Positive or Negative Regulatory Circuit Inference from Multilevel Dynamics. - Elisabeth Remy; Paul Ruet; Denis Thieffry (POSTA, 2006)

Qualitative Petri Net Modelling of Genetic Networks. - Claudine Chaouiya; Elisabeth Remy; Denis Thieffry (Trans. Comp. Sys. Biology, 2006)

On Differentiation and Homeostatic Behaviours of Boolean Dynamical Systems. - Elisabeth Remy; Paul Ruet (Trans. Comp. Sys. Biology, 2006)

From Logical Regulatory Graphs to Standard Petri Nets: Dynamical Roles and Functionality of Feedback Circuits. - Elisabeth Remy; Paul Ruet; Luis Eduardo Mendoza; Denis Thieffry; Claudine Chaouiya (Trans. Comp. Sys. Biology, 2006)

From minimal signed circuits to the dynamics of Boolean regulatory networks. - Elisabeth Remy; Paul Ruet (ECCB, 2008)

Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework. - Elisabeth Remy; Paul Ruet; Denis Thieffry (Adv. Appl. Math., 2008)

Petri net modelling of biological regulatory networks. - Claudine Chaouiya; Elisabeth Remy; Denis Thieffry (J. Discrete Algorithms, 2008)

A Reduction of Logical Regulatory Graphs Preserving Essential Dynamical Properties. - Aurélien Naldi; Elisabeth Remy; Denis Thieffry; Claudine Chaouiya (CMSB, 2009)

Reduction of Logical Models of Regulatory Networks Yields Insight into Dynamical properties. - Claudine Chaouiya; Aurélien Naldi; Elisabeth Remy; Denis Thieffry (CCA, 2010)

Petri net representation of multi-valued logical regulatory graphs. - Claudine Chaouiya; Aurélien Naldi; Elisabeth Remy; Denis Thieffry (Nat. Comput., 2011)

Dynamically consistent reduction of logical regulatory graphs. - Aurélien Naldi; Elisabeth Remy; Denis Thieffry; Claudine Chaouiya (Theor. Comput. Sci., 2011)

Relations between gene regulatory networks and cell dynamics in Boolean models. - Gilles Didier; Elisabeth Remy (Discret. Appl. Math., 2012)

Quantification of reachable attractors in asynchronous discrete dynamics. - Nuno D. Mendes; Pedro T. Monteiro 001; Jorge Carneiro; Elisabeth Remy; Claudine Chaouiya (CoRR, 2014)

Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling. - Åsmund Flobak; Anaïs Baudot; Elisabeth Remy; Liv Thommesen; Denis Thieffry; Martin Kuiper; Astrid Lægreid (PLoS Comput. Biol., 2015)

Random walk with restart on multiplex and heterogeneous biological networks. - Alberto Valdeolivas; Laurent Tichit; Claire Navarro; Sophie Perrin; Gaëlle Odelin; Nicolas Levy; Pierre Cau; Elisabeth Remy; Anaïs Baudot (Bioinform., 2019)

MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach. - Léo Pio-Lopez; Alberto Valdeolivas; Laurent Tichit; Elisabeth Remy; Anaïs Baudot (CoRR, 2020)

Average Sensitivity of Nested Canalizing Multivalued Functions. - Elisabeth Remy; Paul Ruet (CMSB, 2023)

Logical modelling of myelofibrotic microenvironment predicts dysregulated progenitor stem cell crosstalk. - Stephen P. Chapman; Estelle Duprez; Elisabeth Remy (Biosyst., 2023)

Logical Modelling, Some Recent Methodological Advances Illustrated. - Claudine Chaouiya; Pedro T. Monteiro 001; Elisabeth Remy (AUTOMATA, 2024)

Predictive modelling of acute Promyelocytic leukaemia resistance to retinoic acid therapy. - José A. Sánchez-Villanueva; Lia N'guyen; Mathilde Poplineau; Estelle Duprez; Elisabeth Remy; Denis Thieffry (Briefings Bioinform., 2024)

Refining Boolean models with the partial most permissive scheme. - Nadine Ben Boina; Brigitte Mossé; Anaïs Baudot; Elisabeth Remy (CoRR, 2024)

From multivalued to Boolean functions: Preservation of soft nested canalization. - Elisabeth Remy; Paul Ruet (Theor. Comput. Sci., 2024)