Genetic correlates of gene expression in recombinant inbred strains - A relational model system to explore neurobehavioral phenotypes. - Elissa J. Chesler; Jintao Wang; Lu Lu 004; Yanhua Qu; Kenneth F. Manly; Robert W. Williams (Neuroinformatics, 2003)

Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data. - Elissa J. Chesler; Michael A. Langston (Systems Biology and Regulatory Genomics, 2005)

Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems Biology. - Yun Zhang 013; Faisal N. Abu-Khzam; Nicole E. Baldwin; Elissa J. Chesler; Michael A. Langston; Nagiza F. Samatova (SC, 2005)

Methodological aspects of the genetic dissection of gene expression. - Örjan Carlborg; D. J. De Koning; Kenneth F. Manly; Elissa J. Chesler; Robert W. Williams; Chris S. Haley (Bioinform., 2005)

Extracting Gene Networks for Low-Dose Radiation Using Graph Theoretical Algorithms. - Brynn H. Voy; Jon A. Scharff; Andy D. Perkins; Arnold M. Saxton; Bhavesh Borate; Elissa J. Chesler; Lisa K. Branstetter; Michael A. Langston (PLoS Comput. Biol., 2006)

Dynamic Visualization of Coexpression in Systems Genetics Data. - Joshua R. New; Wesley Kendall; Jian Huang 007; Elissa J. Chesler (IEEE Trans. Vis. Comput. Graph., 2008)

Reconstructing Generalized Logical Networks of Transcriptional Regulation in Mouse Brain from Temporal Gene Expression Data. - Mingzhou (Joe) Song; Chris K. Lewis; Eric R. Lance; Elissa J. Chesler; Roumyana Kirova Yordanova; Michael A. Langston; Kerrie H. Lodowski; Susan E. Bergeson (EURASIP J. Bioinform. Syst. Biol., 2009)

Inferring gene coexpression networks for low dose ionizing radiation using graph theoretical algorithms and systems genetics. - Sudhir Naswa; Gary L. Rogers Jr.; Rachel M. Lynch; Stephen A. Kania; Suchita Das; Elissa J. Chesler; Arnold M. Saxton; Brynn H. Voy; Michael A. Langston (BMC Bioinform., 2010)

A Systematic Comparison of Genome Scale Clustering Algorithms - (Extended Abstract). - Jeremy J. Jay; John D. Eblen; Yun Zhang 013; Mikael Benson; Andy D. Perkins; Arnold M. Saxton; Brynn H. Voy; Elissa J. Chesler; Michael A. Langston (ISBRA, 2011)

Autism candidate genes via mouse phenomics. - Terrence F. Meehan; Christopher J. Carr; Jeremy J. Jay; Carol J. Bult; Elissa J. Chesler; Judith A. Blake (J. Biomed. Informatics, 2011)

On Bipartite Graph Decomposition in the Presence of Noise, with Applications to Biological Data Clustering. - Charles A. Phillips; Jeremy J. Jay; Erich J. Baker; Elissa J. Chesler; Michael A. Langston (CTW, 2012)

A systematic comparison of genome-scale clustering algorithms. - Jeremy J. Jay; John D. Eblen; Yun Zhang 013; Mikael Benson; Andy D. Perkins; Arnold M. Saxton; Brynn H. Voy; Elissa J. Chesler; Michael A. Langston (BMC Bioinform., 2012)

GeneWeaver: a web-based system for integrative functional genomics. - Erich J. Baker; Jeremy J. Jay; Jason A. Bubier; Michael A. Langston; Elissa J. Chesler (Nucleic Acids Res., 2012)

A Context-Driven Gene Prioritization Method for Web-Based Functional Genomics. - Jeremy J. Jay; Erich J. Baker; Elissa J. Chesler (ISBRA, 2013)

Algorithmic tools for tripartite data analysis. - Charles A. Phillips; Erich J. Baker; Elissa J. Chesler; Michael A. Langston (BMC Bioinform., 2014)

On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data types. - Yun Zhang 013; Charles A. Phillips; Gary L. Rogers; Erich J. Baker; Elissa J. Chesler; Michael A. Langston (BMC Bioinform., 2014)

Scalable multipartite subgraph enumeration for integrative analysis of heterogeneous experimental functional genomics data. - Charles A. Phillips; Kai Wang; Jason A. Bubier; Erich J. Baker; Elissa J. Chesler; Michael A. Langston (BCB, 2015)

Analysis of sleep traits in knockout mice from the large-scale KOMP2 population using a non-invasive, high-throughput piezoelectric system. - Mansi Sethi; Shreyas S. Joshi; Martin Striz; Neil Cole; Jennifer Ryan; Michael E. Lhamon; Anuj Agarwal; Stacey J. Sukoff Rizzo; James M. Denegre; Robert E. Braun; David W. Fardo; Kevin D. Donohue; et al. (BMC Bioinform., 2015)

GeneWeaver: data driven alignment of cross-species genomics in biology and disease. - Erich J. Baker; Jason A. Bubier; Timothy Reynolds; Michael A. Langston; Elissa J. Chesler (Nucleic Acids Res., 2016)

Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice. - Molly A. Bogue; Stephen C. Grubb; David O. Walton; Vivek M. Philip; Georgi Kolishovski; Tim Stearns; Matthew H. Dunn; Daniel A. Skelly; Beena Kadakkuzha; Gregg TeHennepe; Kunde Ramamoorthy Govindarajan; Elissa J. Chesler (Nucleic Acids Res., 2018)

On Finding and Enumerating Maximal and Maximum k-Partite Cliques in k-Partite Graphs. - Charles A. Phillips; Kai Wang; Erich J. Baker; Jason A. Bubier; Elissa J. Chesler; Michael A. Langston (Algorithms, 2019)

Curating gene sets: challenges and opportunities for integrative analysis. - Jason A. Bubier; David P. Hill; Gaurab Mukherjee; Timothy Reynolds; Erich J. Baker; Alexander Berger; Jake Emerson; Judith A. Blake; Elissa J. Chesler (Database J. Biol. Databases Curation, 2019)

Mouse Phenome Database: a data repository and analysis suite for curated primary mouse phenotype data. - Molly A. Bogue; Vivek M. Philip; David O. Walton; Stephen C. Grubb; Matthew H. Dunn; Georgi Kolishovski; Jake Emerson; Gaurab Mukherjee; Tim Stearns; Hao He; Vinita Sinha; Beena Kadakkuzha; et al. (Nucleic Acids Res., 2020)

Mouse Phenome Database: towards a more FAIR-compliant and TRUST-worthy data repository and tool suite for phenotypes and genotypes. - Molly A. Bogue; Robyn L. Ball; Vivek M. Philip; David O. Walton; Matthew H. Dunn; Georgi Kolishovski; Anna Lamoureux; Matthew Gerring; Hongping Liang; Jake Emerson; Tim Stearns; Hao He; et al. (Nucleic Acids Res., 2023)

Gridded Visualization of Statistical Trees for High-Dimensional Multipartite Data in Systems Genetics. - Jane Lydia Adams; Robyn L. Ball; Jason A. Bubier; Elissa J. Chesler; Melanie Tory; Michelle A. Borkin (Comput. Graph. Forum, 2025)