MegaR: an interactive R package for rapid sample classification and phenotype prediction using metagenome profiles and machine learning. - Eliza Dhungel; Yassin Mreyoud; Ho-Jin Gwak; Ahmad Rajeh; Mina Rho; Tae-Hyuk Ahn (BMC Bioinform., 2021)

MetaCerberus: distributed highly parallelized HMM-based processing for robust functional annotation across the tree of life. - Jose L. Figueroa III; Eliza Dhungel; Madeline Bellanger; Cory R. Brouwer; Richard Allen White III (Bioinform., 2024)