AlignerBoost: A Generalized Software Toolkit for Boosting Next-Gen Sequencing Mapping Accuracy Using a Bayesian-Based Mapping Quality Framework. - Qi Zheng; Elizabeth A. Grice (PLoS Comput. Biol., 2016)

HmmUFOtu: An HMM and Phylogenetic Placement based Ultra-fast Taxonomic Assignment and OTU Picking Tool for Microbiome Amplicon Sequencing Studies. - Qi Zheng; Jacquelyn Meisel; Casey Bartow-McKenney; Elizabeth A. Grice (BCB, 2018)