FTMAP: extended protein mapping with user-selected probe molecules. - Chi-Ho Ngan; Tanggis Bohnuud; Scott E. Mottarella; Dmitri Beglov; Elizabeth A. Villar; David R. Hall; Dima Kozakov; Sandor Vajda (Nucleic Acids Res., 2012)

Flexible refinement of protein-ligand docking on manifolds. - Hanieh Mirzaei; Elizabeth A. Villar; Scott E. Mottarella; Dmitri Beglov; Ioannis Ch. Paschalidis; Sandor Vajda; Dima Kozakov; Pirooz Vakili (CDC, 2013)