Systems biology of the structural proteome. - Elizabeth Brunk; Nathan Mih; Jonathan Monk; Zhen Zhang; Edward J. O'Brien; Spencer E. Bliven; Ke Chen; Roger L. Chang; Philip E. Bourne; Bernhard O. Palsson (BMC Syst. Biol., 2016)

A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism. - Nathan Mih; Elizabeth Brunk; Aarash Bordbar; Bernhard O. Palsson (PLoS Comput. Biol., 2016)

Machine learning in computational biology to accelerate high-throughput protein expression. - Anand Sastry 002; Jonathan Monk; Hanna Tegel; Mathias Uhlen; Bernhard O. Palsson; Johan Rockberg; Elizabeth Brunk (Bioinform., 2017)

ssbio: a Python framework for structural systems biology. - Nathan Mih; Elizabeth Brunk; Ke Chen; Edward Catoiu; Anand Sastry 002; Erol S. Kavvas; Jonathan M. Monk; Zhen Zhang; Bernhard O. Palsson (Bioinform., 2018)

Machine Learning of Three-Dimensional Protein Structures to Predict the Functional Impacts of Genome Variation. - Kriti Shukla; Kelvin Idanwekhai; Martin Naradikian; Stephanie Ting; Stephen P. Schoenberger; Elizabeth Brunk (J. Chem. Inf. Model., 2024)