Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA. - Elizabeth J. Denning; U. Deva Priyakumar; Lennart Nilsson; Alexander D. MacKerell Jr. (J. Comput. Chem., 2011)

MDAnalysis: A toolkit for the analysis of molecular dynamics simulations. - Naveen Michaud-Agrawal; Elizabeth J. Denning; Thomas B. Woolf; Oliver Beckstein (J. Comput. Chem., 2011)

Computing ensembles of transitions from stable states: Dynamic importance sampling. - Juan R. Perilla; Oliver Beckstein; Elizabeth J. Denning; Thomas B. Woolf (J. Comput. Chem., 2011)