Markov State Models of gene regulatory networks. - Brian K. Chu; Margaret J. Tse; Royce R. Sato; Elizabeth L. Read (BMC Syst. Biol., 2017)

Rare-event sampling of epigenetic landscapes and phenotype transitions. - Margaret J. Tse; Brian K. Chu; Cameron P. Gallivan; Elizabeth L. Read (PLoS Comput. Biol., 2018)

Hydrodynamics of transient cell-cell contact: The role of membrane permeability and active protrusion length. - Kai Liu; Brian Chu; Jay M. Newby; Elizabeth L. Read; John S. Lowengrub; Jun Allard (PLoS Comput. Biol., 2019)

Stochastic modeling reveals kinetic heterogeneity in post-replication DNA methylation. - Luis Busto-Moner; Julien Morival; Honglei Ren; Arjang Fahim; Zachary Reitz; Timothy L. Downing; Elizabeth L. Read (PLoS Comput. Biol., 2020)