Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. - James H. Bullard; Elizabeth Purdom; Kasper D. Hansen; Sandrine Dudoit (BMC Bioinform., 2010)

Methods and challenges in timing chromosomal abnormalities within cancer samples. - Elizabeth Purdom; Christine Ho; Catherine S. Grasso; Michael Quist; Raymond J. Cho; Paul T. Spellman (Bioinform., 2013)

Can We Trust the Bootstrap in High-dimensions? The Case of Linear Models. - Noureddine El Karoui; Elizabeth Purdom (J. Mach. Learn. Res., 2018)

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets. - Davide Risso; Liam Purvis; Russell B. Fletcher; Diya Das; John Ngai; Sandrine Dudoit; Elizabeth Purdom (PLoS Comput. Biol., 2018)

The non-parametric bootstrap and spectral analysis in moderate and high-dimension. - Noureddine El Karoui; Elizabeth Purdom (AISTATS, 2019)

MethCP: Differentially Methylated Region Detection with Change Point Models. - Boying Gong; Elizabeth Purdom (J. Comput. Biol., 2020)

mbkmeans: Fast clustering for single cell data using mini-batch k-means. - Stephanie C. Hicks; Ruoxi Liu; Yuwei Ni; Elizabeth Purdom; Davide Risso (PLoS Comput. Biol., 2021)

Improving replicability in single-cell RNA-Seq cell type discovery with Dune. - Hector Roux de Bézieux; Kelly Street; Stephan Fischer; Koen Van den Berge; Rebecca Chance; Davide Risso; Jesse A. Gillis; John Ngai; Elizabeth Purdom; Sandrine Dudoit (BMC Bioinform., 2024)