HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads. - Serghei Mangul; Harry (Taegyun) Yang; Farhad Hormozdiari; Elizabeth Tseng; Alex Zelikovsky; Eleazar Eskin (ISBRA, 2016)

SpaRC: scalable sequence clustering using Apache Spark. - Lizhen Shi; Xiandong Meng; Elizabeth Tseng; Michael Mascagni; Zhong Wang 003 (Bioinform., 2019)

I-CONVEX: Fast and Accurate de Novo Transcriptome Recovery from Long Reads. - Sina Baharlouei; Meisam Razaviyayn; Elizabeth Tseng; David Tse (PKDD/ECML Workshops (2), 2022)