ReDiT: Repeat Discrepancy Tagger-a shotgun assembly finishing aid. - Martti T. Tammi; Erik Arner; Ellen Kindlund; Björn Andersson (Bioinform., 2004)

DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions. - Erik Arner; Martti T. Tammi; Anh-Nhi Tran; Ellen Kindlund; Björn Andersson (BMC Bioinform., 2006)

GRAT - genome-scale rapid alignment tool. - Ellen Kindlund; Martti T. Tammi; Erik Arner; Daniel Nilsson; Björn Andersson (Comput. Methods Programs Biomed., 2007)