Subclonal variant calling with multiple samples and prior knowledge. - Moritz Gerstung; Elli Papaemmanuil; Peter J. Campbell (Bioinform., 2014)

Isabl Platform, a digital biobank for processing multimodal patient data. - Juan S. Medina-Martínez; Juan E. Arango-Ossa; Max F. Levine; Yangyu Zhou; Gunes Gundem; Andrew L. Kung; Elli Papaemmanuil (BMC Bioinform., 2020)

Predicting single cell genotypes from single cell expression profiles in AML using deep learning. - Georgios Asimomitis; Maria Sirenko; Christos Fotis; Dan A. Landau; Leonidas G. Alexopoulos; Elli Papaemmanuil (ICBBB, 2023)