Morphogenesis in Plants: Modeling the Shoot Apical Meristem, and Possible Applications. - Eric Mjolsness; Elliot M. Meyerowitz; Victoria Gor; Tobias Mann (Evolvable Hardware, 1999)

Cellerator: extending a computer algebra system to include biochemical arrows for signal transduction simulations. - Bruce E. Shapiro; Andre Levchenko; Elliot M. Meyerowitz; Barbara J. Wold; Eric Mjolsness (Bioinform., 2003)

Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem. - Henrik Jönsson; Marcus Heisler; G. Venugopala Reddy; Vikas Agrawal; Victoria Gor; Bruce E. Shapiro; Eric Mjolsness; Elliot M. Meyerowitz (ISMB (Supplement of Bioinformatics), 2005)

SEGMENT3D: A web-based application for collaborative segmentation of 3D images used in the shoot apical meristem. - Thiago Vallin Spina; Johannes Stegmaier; Alexandre X. Falcão; Elliot Meyerowitz; Alexandre Cunha (ISBI, 2018)

Cell segmentation in 3D confocal images using supervoxel merge-forests with CNN-based hypothesis selection. - Johannes Stegmaier; Thiago Vallin Spina; Alexandre X. Falcão; Andreas Bartschat; Ralf Mikut; Elliot Meyerowitz; Alexandre Cunha (ISBI, 2018)

The self-organization of plant microtubules inside the cell volume yields their cortical localization, stable alignment, and sensitivity to external cues. - Vincent Mirabet; Pawel Krupinski; Olivier Hamant; Elliot M. Meyerowitz; Henrik Jönsson; Arezki Boudaoud (PLoS Comput. Biol., 2018)

CNN-Based Preprocessing to Optimize Watershed-Based Cell Segmentation in 3D Confocal Microscopy Images. - Dennis Eschweiler; Thiago Vallin Spina; Rohan C. Choudhury; Elliot Meyerowitz; Alexandre Cunha; Johannes Stegmaier (ISBI, 2019)

J Regularization Improves Imbalanced Multiclass Segmentation. - Fidel A. Guerrero-Peña; Pedro D. Marrero-Fernández; Paul T. Tarr; Tsang Ing Ren; Elliot M. Meyerowitz; Alexandre Cunha (ISBI, 2020)