Estimation of data-specific constitutive exons with RNA-Seq data. - Ellis Patrick; Michael J. Buckley; Yee Hwa Yang (BMC Bioinform., 2013)

Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information. - Ellis Patrick; Michael J. Buckley; David M. Lin; Yee Hwa Yang (BMC Genom., 2013)

Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway. - Pengyi Yang; Ellis Patrick; Shi-Xiong Tan; Daniel J. Fazakerley; James G. Burchfield; Christopher Gribben; Matthew J. Prior; David E. James; Yee Hwa Yang (Bioinform., 2014)

Detection of Multiple Outbreaks Using Spatio-Temporal EWMA-Ordered Statistics. - Ross Sparks; Ellis Patrick (Commun. Stat. Simul. Comput., 2014)

Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data. - Ellis Patrick; Michael J. Buckley; Samuel Müller 001; David M. Lin; Jean Yee Hwa Yang (Bioinform., 2015)

DCARS: differential correlation across ranked samples. - Shila Ghazanfar; Dario Strbenac; John T. Ormerod; Jean Yee Hwa Yang; Ellis Patrick (Bioinform., 2019)

Deconvolving the contributions of cell-type heterogeneity on cortical gene expression. - Ellis Patrick; Mariko Taga; Ayla Ergün; Bernard Ng; William Casazza; Maria Cimpean; Christina Yung; Julie A. Schneider; David A. Bennett; Chris Gaiteri; Philip L. De Jager; Elizabeth M. Bradshaw; et al. (PLoS Comput. Biol., 2020)

AFid: a tool for automated identification and exclusion of autofluorescent objects from microscopy images. - Heeva Baharlou; Nicolas P. Canete; Kirstie M. Bertram; Kerrie J. Sandgren; Anthony Cunningham; Andrew N. Harman; Ellis Patrick (Bioinform., 2021)

spicyR: spatial analysis of in situ cytometry data in R. - Nicolas P. Canete; Sourish S. Iyengar; John T. Ormerod; Heeva Baharlou; Andrew N. Harman; Ellis Patrick (Bioinform., 2022)

Cross-Platform Omics Prediction procedure: a statistical machine learning framework for wider implementation of precision medicine. - Kevin Y. X. Wang; Gulietta M. Pupo; Varsha Tembe; Ellis Patrick; Dario Strbenac; Sarah-Jane Schramm; John F. Thompson; Richard A. Scolyer; Samuel Müller 001; Garth Tarr; Graham J. Mann; Jean Yee Hwa Yang (npj Digit. Medicine, 2022)

scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction. - Yue Cao; Yingxin Lin; Ellis Patrick; Pengyi Yang; Jean Yee Hwa Yang (Bioinform., 2022)

Deep multimodal graph-based network for survival prediction from highly multiplexed images and patient variables. - Xiaohang Fu; Ellis Patrick; Jean Y. H. Yang; David Dagan Feng; Jinman Kim (Comput. Biol. Medicine, 2023)

MoleculeExperiment enables consistent infrastructure for molecule-resolved spatial omics data in bioconductor. - Bárbara Zita Peters Couto; Nicholas Robertson; Ellis Patrick; Shila Ghazanfar (Bioinform., 2023)