Mutation D816V Alters the Internal Structure and Dynamics of c-KIT Receptor Cytoplasmic Region: Implications for Dimerization and Activation Mechanisms. - Elodie Laine; Isaure Chauvot de Beauchêne; David Perahia; Christian Auclair; Luba Tchertanov (PLoS Comput. Biol., 2011)

Allosteric Communication across the Native and Mutated KIT Receptor Tyrosine Kinase. - Elodie Laine; Christian Auclair; Luba Tchertanov (PLoS Comput. Biol., 2012)

Identification of Protein Interaction Partners from Shape Complementarity Molecular Cross-Docking. - Elodie Laine; Alessandra Carbone (ICIAP Workshops, 2013)

Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information. - Anne Lopes; Sophie Sacquin-Mora; Viktoriya Dimitrova; Elodie Laine; Yann Ponty; Alessandra Carbone (PLoS Comput. Biol., 2013)

Hotspot Mutations in KIT Receptor Differentially Modulate Its Allosterically Coupled Conformational Dynamics: Impact on Activation and Drug Sensitivity. - Isaure Chauvot de Beauchêne; Ariane Allain; Nicolas Panel; Elodie Laine; Alain Trouvé; Patrice Dubreuil; Luba Tchertanov (PLoS Comput. Biol., 2014)

Local Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein-Protein Interactions. - Elodie Laine; Alessandra Carbone (PLoS Comput. Biol., 2015)

Dissecting protein architecture with communication blocks and communicating segment pairs. - Yasaman Karami; Elodie Laine; Alessandra Carbone (BMC Bioinform., 2016)

JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structures. - Hugues Ripoche; Elodie Laine; Nicoletta Ceres; Alessandra Carbone (Nucleic Acids Res., 2017)

INTerface Builder: A Fast Protein-Protein Interface Reconstruction Tool. - Chloé Dequeker; Elodie Laine; Alessandra Carbone (J. Chem. Inf. Model., 2017)

Meet-U: Educating through research immersion. - Nika Abdollahi; Alexandre Albani; Éric Anthony; Agnes Baud; Mélissa Cardon; Robert Clerc; Dariusz Czernecki; Romain Conte; Laurent David; Agathe Delaune; Samia Djerroud; Pauline Fourgoux; et al. (PLoS Comput. Biol., 2018)

Functional protein sites Decipheredby Evolution and Structural dynamics. - Elodie Laine (2020)

Predicting substitutions to modulate disorder and stability in coiled-coils. - Yasaman Karami; Paul Saighi; Rémy Vanderhaegen; Denis Gerlier; Sonia Longhi; Elodie Laine; Alessandra Carbone (BMC Bioinform., 2020)

Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties. - Flavia Corsi; Richard Lavery; Elodie Laine; Alessandra Carbone (PLoS Comput. Biol., 2020)

Protein sequence-to-structure learning: Is this the end(-to-end revolution)? - Elodie Laine; Stephan Eismann; Arne Elofsson; Sergei Grudinin (CoRR, 2021)

Deep Local Analysis evaluates protein docking conformations with locally oriented cubes. - Yasser Mohseni Behbahani; Simon Crouzet; Elodie Laine; Alessandra Carbone (Bioinform., 2022)

ASES: visualizing evolutionary conservation of alternative splicing in proteins. - Diego Javier Zea; Hugues Richard; Elodie Laine (Bioinform., 2022)

From complete cross-docking to partners identification and binding sites predictions. - Chloé Dequeker; Yasser Mohseni Behbahani; Laurent David; Elodie Laine; Alessandra Carbone (PLoS Comput. Biol., 2022)

Deep Local Analysis deconstructs protein-protein interfaces and accurately estimates binding affinity changes upon mutation. - Yasser Mohseni Behbahani; Elodie Laine; Alessandra Carbone (Bioinform., 2023)

PETIMOT: A Novel Framework for Inferring Protein Motions from Sparse Data Using SE(3)-Equivariant Graph Neural Networks. - Valentin Lombard; Sergei Grudinin; Elodie Laine (CoRR, 2025)