Directional Representations of 4D Echocardiography for Temporal Quantification of LV Volume. - Elsa D. Angelini; Andrew Laine; Shin Takuma; Shunichi Homma (MICCAI, 1999)

LV Volume Quantification via Spatio-Temporal Analysis of Real-Time 3D Echocardiography. - Elsa D. Angelini; Andrew Laine; Shin Takuma; Jeffrey W. Holmes; Shunichi Homma (IEEE Trans. Medical Imaging, 2001)

Harmonic multiresolution estimators for denoising and regularization of SPECT-PET data. - Elsa D. Angelini; Jérôme Kalifa; Andrew F. Laine (ISBI, 2002)

Improving statistics for hybrid segmentation of high-resolution multichannel images. - Elsa D. Angelini; Celina Imielinska; Yinpeng Jin; Andrew F. Laine (Image Processing, 2002)

De-noising SPECT/PET Images Using Cross-Scale Regularization. - Yinpeng Jin; Elsa D. Angelini; Peter D. Esser; Andrew Laine (MICCAI (2), 2003)

Fusion of Brushlet and Wavelet Denoising Methods for Nuclear Images. - Andrew Laine; Elsa D. Angelini; Yinpeng Jin; Peter D. Esser; Ronald L. Van Heertum (ISBI, 2004)

Comparison of Ventricular Geometry for Two Real Time 3D Ultrasound Machines With Three Dimensional Level Set. - Andrew Laine; Elsa D. Angelini; Ryo Otsuka; Shunichi Homma (ISBI, 2004)

Multi-phase Three-Dimensional Level Set Segmentation of Brain MRI. - Elsa D. Angelini; Ting Song; Brett D. Mensh; Andrew Laine (MICCAI (1), 2004)

Segmentation and quantitative evaluation of brain MRI data with a multiphase 3D implicit deformable model. - Elsa D. Angelini; Ting Song; Brett D. Mensh; Andrew Laine (Image Processing, 2004)

Tracking of LV Endocardial Surface on Real-Time Three-Dimensional Ultrasound with Optical Flow. - Qi Duan; Elsa D. Angelini; Susan L. Herz; Olivier Gérard; Pascal Allain; Christopher M. Ingrassia; Kevin D. Costa; Jeffrey W. Holmes; Shunichi Homma; Andrew Laine (FIMH, 2005)

Recognition of micro-array protein crystals images using multi-scale representations. - Ya Wang; David H. Kim; Elsa D. Angelini; Andrew F. Laine (Image Processing, 2005)

Review of Myocardial Motion Estimation Methods from Optical Flow Tracking on Ultrasound Data. - Elsa D. Angelini; Olivier Gérard (EMBC, 2006)

Tracking Endocardium Using Optical Flow along Iso-Value Curve. - Qi Duan; Elsa D. Angelini; Shunichi Homma; Andrew Laine (EMBC, 2006)

An incremental and optimized learning method for the automatic classification of protein crystal images. - George Xu; Casey Chiu; Elsa D. Angelini; Andrew F. Laine (EMBC (Supplement), 2006)

Homogeneity measures for multiphase level set segmentation of brain MRI. - Elsa D. Angelini; Ting Song; Andrew Laine (ISBI, 2006)

Comparing optical-flow based methods for quantification of myocardial deformations on RT3D ultrasound. - Qi Duan; Elsa D. Angelini; Olivier Gérard; Shunichi Homma; Andrew Laine (ISBI, 2006)

Variational segmentation framework in prolate spheroidal coordinates for 3D real-time echocardiography. - Bruno Vallet; Elsa D. Angelini; Andrew F. Laine (Image Processing, 2006)

Automated Segmentation of the Left Ventricle Including Papillary Muscles in Cardiac Magnetic Resonance Images. - Racha El-Berbari; Isabelle Bloch; Alban Redheuil; Elsa D. Angelini; Élie Mousseaux; Frédérique Frouin; Alain Herment (FIMH, 2007)

Simulation of 3D Ultrasound with a Realistic Electro-mechanical Model of the Heart. - Qi Duan; Philippe Moireau; Elsa D. Angelini; Dominique Chapelle; Andrew F. Laine (FIMH, 2007)

CT-PET Landmark-based Lung Registration Using a Dynamic Breathing Model. - Sylvie Chambon; Antonio Moreno-Ingelmo; Anand P. Santhanam; Jannick P. Rolland; Elsa D. Angelini; Isabelle Bloch (ICIAP, 2007)

From Generic Knowledge to Specific Reasoning for Medical Image Interpretation Using Graph based Representations. - Jamal Atif; Céline Hudelot; Geoffroy Fouquier; Isabelle Bloch; Elsa D. Angelini (IJCAI, 2007)

Combining Radiometric and Spatial Structural Information in a New Metric for Minimal Surface Segmentation. - Olivier Nempont; Jamal Atif; Elsa D. Angelini; Isabelle Bloch (IPMI, 2007)

Detection of Glioma Evolution on Longitudinal Mri Studies. - Elsa D. Angelini; Jamal Atif; Julie Delon; Emmanuel Mandonnet; Hugues Duffau; Laurent Capelle (ISBI, 2007)

Grafip: A Framework for the Representation of Healthy and Pathological Cerebral Information. - Jamal Atif; Céline Hudelot; Olivier Nempont; Nathalie Richard; Bénédicte Batrancourt; Elsa D. Angelini; Isabelle Bloch (ISBI, 2007)

Validation of Optical-Flow for Quantification of Myocardial Deformations on Simulated Rt3d Ultrasound. - Qi Duan; Elsa D. Angelini; Shunichi Homma; Andrew Laine (ISBI, 2007)

Adaptive Segmentation of Internal Brain Structures in Pathological Mr Images Depending on Tumor Types. - Hassan Khotanlou; Jamal Atif; Elsa D. Angelini; Hugues Duffau; Isabelle Bloch (ISBI, 2007)

Thoracic CT-PET Registration Using a 3D Breathing Model. - Antonio Moreno-Ingelmo; Sylvie Chambon; Anand P. Santhanam; Roberta Brocardo; Patrick Kupelian; Jannick P. Rolland; Elsa D. Angelini; Isabelle Bloch (MICCAI (1), 2007)

Brain MRI Segmentation with Multiphase Minimal Partitioning: A Comparative Study. - Elsa D. Angelini; Ting Song; Brett D. Mensh; Andrew F. Laine (Int. J. Biomed. Imaging, 2007)

Structure segmentation and recognition in images guided by structural constraint propagation. - Olivier Nempont; Jamal Atif; Elsa D. Angelini; Isabelle Bloch (ECAI, 2008)

Segmentation of fetal 3D ultrasound based on statistical prior and deformable model. - Jérémie Anquez; Elsa D. Angelini; Isabelle Bloch (ISBI, 2008)

Real-time segmentation of 4D ultrasound by Active Geometric Functions. - Qi Duan; Elsa D. Angelini; Shunichi Homma; Andrew F. Laine (ISBI, 2008)

Vectorial multi-phase mouse brain tumor segmentation in T1-T2 MRI. - Vincent Israel-Jost; Elodie Breton; Elsa D. Angelini; Philippe Choquet; Isabelle Bloch; André Constantinesco (ISBI, 2008)

Medial-based Bayesian tracking for vascular segmentation: Application to coronary arteries in 3D CT angiography. - David Lesage; Elsa D. Angelini; Isabelle Bloch; Gareth Funka-Lea (ISBI, 2008)

Integrated multimedia electronic patient record and graph-based image information for cerebral tumors. - John Puentes; Bénédicte Batrancourt; Jamal Atif; Elsa D. Angelini; Laurent Lecornu; Abdelhamid Zemirline; Isabelle Bloch; Gouenou Coatrieux; Christian Roux (Comput. Biol. Medicine, 2008)

Coronary Occlusion Detection with 4D Optical Flow Based Strain Estimation on 4D Ultrasound. - Qi Duan; Elsa D. Angelini; Auranuch Lorsakul; Shunichi Homma; Jeffrey W. Holmes; Andrew F. Laine (FIMH, 2009)

Lumen Border Detection of Intravascular Ultrasound via Denoising of Directional Wavelet Representations. - Amin Katouzian; Elsa D. Angelini; Auranuch Lorsakul; Bernhard Sturm; Andrew F. Laine (FIMH, 2009)

Compressed Sensing in microscopy with random projections in the Fourier domain. - Marcio de Moraes Marim; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ICIP, 2009)

Automatic Segmentation of Head Structures on Fetal MRI. - Jérémie Anquez; Elsa D. Angelini; Isabelle Bloch (ISBI, 2009)

Quantitative Validation of Optical Flow Based Myocardial Strain Measures Using Sonomicrometry. - Qi Duan; Katherine Parker; Auranuch Lorsakul; Elsa D. Angelini; Eiichi Hyodo; Shunichi Homma; Jeffrey W. Holmes; Andrew Laine (ISBI, 2009)

Design and Study of Flux-Based Features for 3D Vascular Tracking. - David Lesage; Elsa D. Angelini; Isabelle Bloch; Gareth Funka-Lea (ISBI, 2009)

A Compressed Sensing Approach for Biological Microscopic Image Processing. - Marcio de Moraes Marim; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2009)

Utero-Fetal Unit and Pregnant Woman Modeling Using a Computer Graphics Approach for Dosimetry Studies. - Jérémie Anquez; Tamy Boubekeur; Lazar Bibin; Elsa D. Angelini; Isabelle Bloch (MICCAI (1), 2009)

Bayesian Maximal Paths for Coronary Artery Segmentation from 3D CT Angiograms. - David Lesage; Elsa D. Angelini; Isabelle Bloch; Gareth Funka-Lea (MICCAI (1), 2009)

A New Fuzzy Connectivity Measure for Fuzzy Sets. - Olivier Nempont; Jamal Atif; Elsa D. Angelini; Isabelle Bloch (J. Math. Imaging Vis., 2009)

Surface Function Actives. - Qi Duan; Elsa D. Angelini; Andrew F. Laine (J. Vis. Commun. Image Represent., 2009)

A review of 3D vessel lumen segmentation techniques: Models, features and extraction schemes. - David Lesage; Elsa D. Angelini; Isabelle Bloch; Gareth Funka-Lea (Medical Image Anal., 2009)

Contrast mapping and statistical testing for low-grade GLIOMA growth quantification on brain MRI. - Elsa D. Angelini; Julie Delon; Laurent Capelle; Emmanuel Mandonnet (ISBI, 2010)

Segmentation of the fetal envelope on ante-natal MRI. - Jérémie Anquez; Lazar Bibin; Elsa D. Angelini; Isabelle Bloch (ISBI, 2010)

Compressed sensing for digital holographic microscopy. - Marcio de Moraes Marim; Michael Atlan; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2010)

Joint variational segmentation of CT-PET data for tumoral lesions. - Julien Wojak; Elsa D. Angelini; Isabelle Bloch (ISBI, 2010)

Physics-Based Modeling of the Pregnant Woman. - Juan Pablo de la Plata Alcalde; Lazar Bibin; Jérémie Anquez; Tamy Boubekeur; Elsa D. Angelini; Isabelle Bloch (ISMBS, 2010)

Measurement of the Skin-Liver Capsule Distance on Ultrasound RF Data for 1D Transient Elastography. - Stéphane Audière; Maurice Charbit; Elsa D. Angelini; Jennifer Oudry; Laurent Sandrin (MICCAI (2), 2010)

Introducing Shape Constraint Via Legendre Moments in a Variational Framework for Cardiac Segmentation on Non-contrast CT Images. - Julien Wojak; Elsa D. Angelini; Isabelle Bloch (VISAPP (2), 2010)

Hybrid 3D pregnant woman and fetus modeling from medical imaging for dosimetry studies. - Lazar Bibin; Jérémie Anquez; Elsa D. Angelini; Isabelle Bloch (Int. J. Comput. Assist. Radiol. Surg., 2010)

Real-time segmentation by Active Geometric Functions. - Qi Duan; Elsa D. Angelini; Andrew F. Laine (Comput. Methods Programs Biomed., 2010)

Compressed Sensing with off-axis frequency-shifting holography - Marcio de Moraes Marim; Michael Atlan; Elsa D. Angelini; Jean-Christophe Olivo-Marin (CoRR, 2010)

Whole-Body Pregnant Woman Modeling By Digital Geometry Processing With Detailed Uterofetal Unit Based on Medical Images. - Lazar Bibin; Jérémy Anquez; Juan Pablo de la Plata Alcalde; Tamy Boubekeur; Elsa D. Angelini; Isabelle Bloch (IEEE Trans. Biomed. Eng., 2010)

Parameterization of real-time 3D speckle tracking framework for cardiac strain assessment. - Auranuch Lorsakul; Qi Duan; Ming Jack Po; Elsa D. Angelini; Shunichi Homma; Andrew F. Laine (EMBC, 2011)

FEMONUM: A Framework for Whole Body Pregnant Woman Modeling from Ante-Natal Imaging Data. - Juan Pablo de la Plata Alcalde; Jérémie Anquez; Lazar Bibin; Tamy Boubekeur; Elsa D. Angelini; Isabelle Bloch (Eurographics (Dirk Bartz Prize), 2011)

Numerical evaluation of sampling bounds for near-optimal reconstruction in compressed sensing. - Yoann Le Montagner; Marcio de Moraes Marim; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ICIP, 2011)

Comparison of reconstruction algorithms in compressed sensing applied to biological imaging. - Yoann Le Montagner; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2011)

Vessel geometry modeling and segmentation using convolution surfaces and an implicit medial axis. - Guillaume Pizaine; Elsa D. Angelini; Isabelle Bloch; Shérif Makram-Ebeid (ISBI, 2011)

Evaluation of in vivo Liver Tissue Characterization with Spectral RF Analysis versus Elasticity. - Stéphane Audière; Elsa D. Angelini; Maurice Charbit; Véronique Miette (MICCAI (1), 2011)

Implicit medial representation for vessel segmentation. - Guillaume Pizaine; Elsa D. Angelini; Isabelle Bloch; Shérif Makram-Ebeid (Image Processing, 2011)

Evidence for potentials and limitations of brain plasticity using an atlas of functional resectability of WHO grade II gliomas: Towards a "minimal common brain". - Tamara Ius; Elsa D. Angelini; Michel Thiebaut de Schotten; Emmanuel Mandonnet; Hugues Duffau (NeuroImage, 2011)

Impact of temporal resolution on LV myocardial regional strain assessment with real-time 3D ultrasound. - Auranuch Lorsakul; Viktor Gamarnik; Qi Duan; Cesare Russo; Elsa D. Angelini; Shunichi Homma; Andrew F. Laine (EMBC, 2012)

Video reconstruction using compressed sensing measurements and 3d total variation regularization for bio-imaging applications. - Yoann Le Montagner; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ICIP, 2012)

Maximum likelihood estimation of Young's modulus in transient elastography with unknown line-of-sight orientation. - Maurice Charbit; Elsa D. Angelini; Stéphane Audière (ISBI, 2012)

Brushlet segmentation for automatic detection of lumen borders in IVUS images: A comparison study. - Amin Katouzian; Elsa D. Angelini; Bernhard Sturm; Andrew F. Laine (ISBI, 2012)

Segmentation-free and multiscale-free extraction of medial information using Gradient Vector Flow - Application to vascular structures. - Guillaume Pizaine; Raphael Prevost; Elsa D. Angelini; Isabelle Bloch; Shérif Makram-Ebeid (ISBI, 2012)

Differential MRI analysis for quantification of low grade glioma growth. - Elsa D. Angelini; Julie Delon; Alpha Boubacar Bah; Laurent Capelle; Emmanuel Mandonnet (Medical Image Anal., 2012)

A State-of-the-Art Review on Segmentation Algorithms in Intravascular Ultrasound (IVUS) Images. - Amin Katouzian; Elsa D. Angelini; Stephane G. Carlier; Jasjit S. Suri; Nassir Navab; Andrew F. Laine (IEEE Trans. Inf. Technol. Biomed., 2012)

Segmentation of fetal envelope from 3D ultrasound images based on pixel intensity statistical distribution and shape priors. - Sonia Dahdouh; Antoine Serrurier; Gilles Grange; Elsa D. Angelini; Isabelle Bloch (ISBI, 2013)

Accurate and robust shape descriptors for the identification of RIB cage structures in CT-images with Random Forests. - Mariem Gargouri; Julien Tierny; Erwan Jolivet; Philippe Petit; Elsa D. Angelini (ISBI, 2013)

Robust quantification of pulmonary emphysema with a Hidden Markov Measure Field model. - Yrjö Tapio Hame; Elsa D. Angelini; Eric A. Hoffman; R. Graham Barr; Andrew F. Laine (ISBI, 2013)

Locally weighted total variation denoising for ringing artifact suppression in pet reconstruction using PSF modeling. - Arthur Mikhno; Elsa D. Angelini; Bing Bai; Andrew F. Laine (ISBI, 2013)

Phase retrieval with sparsity priors and application to microscopy video reconstruction. - Yoann Le Montagner; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2013)

Conciliating syntactic and semantic constraints for multi-phase and multi-channel region segmentation. - Vincent Israel-Jost; Jérôme Darbon; Elsa D. Angelini; Isabelle Bloch (Comput. Vis. Image Underst., 2013)

Automatic Segmentation of Antenatal 3-D Ultrasound Images. - Jérémie Anquez; Elsa D. Angelini; Gilles Grange; Isabelle Bloch (IEEE Trans. Biomed. Eng., 2013)

Toward diagnostic criteria for left ventricular systolic dysfunction from myocardial deformation. - Viktor Gamarnik; Cesare Russo; Elsa D. Angelini; Andrew Laine (BHI, 2014)

On the implementation of the multi-phase region segmentation, solving the hidden phase problem. - Vincent Israel-Jost; Jérôme Darbon; Elsa D. Angelini; Isabelle Bloch (ICIP, 2014)

Locally weighted total variation denoising for PSF modeling artifact suppression in PET reconstruction. - Arthur Mikhno; Elsa D. Angelini; Andrew F. Laine (ISBI, 2014)

An Unbiased Risk Estimator for Image Denoising in the Presence of Mixed Poisson-Gaussian Noise. - Yoann Le Montagner; Elsa D. Angelini; Jean-Christophe Olivo-Marin (IEEE Trans. Image Process., 2014)

Maximum Likelihood Estimation of Shear Wave Speed in Transient Elastography. - Stéphane Audière; Elsa D. Angelini; Laurent Sandrin; Maurice Charbit (IEEE Trans. Medical Imaging, 2014)

Adaptive Quantification and Longitudinal Analysis of Pulmonary Emphysema With a Hidden Markov Measure Field Model. - Yrjö Tapio Hame; Elsa D. Angelini; Eric A. Hoffman; R. Graham Barr; Andrew F. Laine (IEEE Trans. Medical Imaging, 2014)

Non-invasive quantification of brain [18F]-FDG uptake by combining medical health records and dynamic PET imaging data. - Elisa Roccia; Arthur Mikhno; Francesca Zanderigo; Elsa D. Angelini; R. Todd Ogden; J. John Mann; Andrew F. Laine (EMBC, 2015)

BM3D-based ultrasound image denoising via brushlet thresholding. - Yu Gan 003; Elsa D. Angelini; Andrew F. Laine; Christine P. Hendon (ISBI, 2015)

Sparse sampling and unsupervised learning of lung texture patterns in pulmonary emphysema: MESA COPD study. - Yrjö Tapio Hame; Elsa D. Angelini; Megha A. Parikh; Benjamin M. Smith; Eric A. Hoffman; R. Graham Barr; Andrew F. Laine (ISBI, 2015)

Equating emphysema scores and segmentations across CT reconstructions: A comparison study. - Yrjo Horne; Elsa D. Angelini; R. Graham Barr; Andrew F. Laine (ISBI, 2015)

Image denoising by multiple compressed sensing reconstructions. - William Meiniel; Yoann Le Montagner; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2015)

Segmentation of embryonic and fetal 3D ultrasound images based on pixel intensity distributions and shape priors. - Sonia Dahdouh; Elsa D. Angelini; Gilles Grange; Isabelle Bloch (Medical Image Anal., 2015)

Toward Noninvasive Quantification of Brain Radioligand Binding by Combining Electronic Health Records and Dynamic PET Imaging Data. - Arthur Mikhno; Francesca Zanderigo; R. Todd Ogden; J. John Mann; Elsa D. Angelini; Andrew F. Laine; Ramin V. Parsey (IEEE J. Biomed. Health Informatics, 2015)

Texton and sparse representation based texture classification of lung parenchyma in CT images. - Jie Yang 041; Xinyang Feng; Elsa D. Angelini; Andrew F. Laine (EMBC, 2016)

Lumbar spine posterior corner detection in X-rays using Haar-based features. - Shahin Ebrahimi; Elsa D. Angelini; Laurent Gajny; Wafa Skalli (ISBI, 2016)

Sparsity-based simplification of spectral-domain optical coherence tomography images of cardiac samples. - William Meiniel; Yu Gan 003; Christine P. Hendon; Jean-Christophe Olivo-Marin; Andrew F. Laine; Elsa D. Angelini (ISBI, 2016)

Emphysema Quantification on Cardiac CT Scans Using Hidden Markov Measure Field Model: The MESA Lung Study. - Jie Yang 041; Elsa D. Angelini; Pallavi P. Balte; Eric A. Hoffman; Colin O. Wu; Bharath A. Venkatesh; R. Graham Barr; Andrew F. Laine (MICCAI (2), 2016)

Explaining Radiological Emphysema Subtypes with Unsupervised Texture Prototypes: MESA COPD Study. - Jie Yang 041; Elsa D. Angelini; Benjamin M. Smith; John H. M. Austin; Eric A. Hoffman; David A. Bluemke; R. Graham Barr; Andrew F. Laine (MCV/BAMBI@MICCAI, 2016)

Adaptive particle filtering for coronary artery segmentation from 3D CT angiograms. - David Lesage; Elsa D. Angelini; Gareth Funka-Lea; Isabelle Bloch (Comput. Vis. Image Underst., 2016)

Guest Editorial IEEE EMBC 2015. - Elsa D. Angelini; Riccardo Bellazzi; Walter G. Besio; Marius George Linguraru (IEEE J. Biomed. Health Informatics, 2016)

Reducing data acquisition for fast Structured Illumination Microscopy using Compressed Sensing. - William Meiniel; Piernicola Spinicelli; Elsa D. Angelini; Alexandra Fragola; Vincent Loriette; François Orieux; Eduardo Sepulveda; Jean-Christophe Olivo-Marin (ISBI, 2017)

Generative method to discover emphysema subtypes with unsupervised learning using lung macroscopic patterns (LMPS): The MESA COPD study. - Jingkuan Song; Jie Yang 041; Benjamin M. Smith; Pallavi P. Balte; Eric A. Hoffman; R. Graham Barr; Andrew F. Laine; Elsa D. Angelini (ISBI, 2017)

Discriminative Localization in CNNs for Weakly-Supervised Segmentation of Pulmonary Nodules. - Xinyang Feng; Jie Yang 041; Andrew F. Laine; Elsa D. Angelini (MICCAI (3), 2017)

Unsupervised Discovery of Spatially-Informed Lung Texture Patterns for Pulmonary Emphysema: The MESA COPD Study. - Jie Yang 041; Elsa D. Angelini; Pallavi P. Balte; Eric A. Hoffman; John H. M. Austin; Benjamin M. Smith; Jingkuan Song; R. Graham Barr; Andrew F. Laine (MICCAI (1), 2017)

Multiview Sequential Learning and Dilated Residual Learning for a Fully Automatic Delineation of the Left Atrium and Pulmonary Veins from Late Gadolinium-Enhanced Cardiac MRI Images. - Guang Yang 006; Jun Chen; Zhifan Gao; Heye Zhang; Hao Ni 001; Elsa D. Angelini; Raad Mohiaddin; Tom Wong; Jennifer Keegan; David N. Firmin (EMBC, 2018)

Alzheimer's disease diagnosis based on anatomically stratified texture analysis of the hippocampus in structural MRI. - Xinyang Feng; Jie Yang 041; Andrew F. Laine; Elsa D. Angelini (ISBI, 2018)

Multiview Two-Task Recursive Attention Model for Left Atrium and Atrial Scars Segmentation. - Jun Chen; Guang Yang 006; Zhifan Gao; Hao Ni 001; Elsa D. Angelini; Raad Mohiaddin; Tom Wong; Yanping Zhang 001; Xiuquan Du; Heye Zhang; Jennifer Keegan; David N. Firmin (MICCAI (2), 2018)

Discriminative analysis of the human cortex using spherical CNNs - a study on Alzheimer's disease diagnosis. - Xinyang Feng; Jie Yang 041; Andrew F. Laine; Elsa D. Angelini (CoRR, 2018)

Denoising of Microscopy Images: A Review of the State-of-the-Art, and a New Sparsity-Based Method. - William Meiniel; Jean-Christophe Olivo-Marin; Elsa D. Angelini (IEEE Trans. Image Process., 2018)

Automatic Brain Tumour Segmentation and Biophysics-Guided Survival Prediction. - Shuo Wang 011; Chengliang Dai; Yuanhan Mo; Elsa D. Angelini; Yike Guo; Wenjia Bai (BrainLes@MICCAI (2), 2019)

Enhanced Generative Model for Unsupervised Discovery of Spatially-Informed Macroscopic Emphysema: The Mesa Copd Study. - Yu Gan 003; Jie Yang 041; Benjamin M. Smith; Pallavi P. Balte; Eric A. Hoffman; Christine P. Hendon; R. Graham Barr; Andrew F. Laine; Elsa D. Angelini (ISBI, 2019)

Automatic Segmentation and Identification of Spinous Processes on Sagittal X-Rays Based on Random Forest Classification and Dedicated Contextual Features. - Shahin Ebrahimi; Laurent Gajny; Wafa Skalli; Elsa D. Angelini (ISBI, 2019)

Unsupervised Domain Adaption With Adversarial Learning (UDAA) for Emphysema Subtyping on Cardiac CT Scans: The Mesa Study. - Jie Yang 041; Thomas Vetterli; Pallavi P. Balte; R. Graham Barr; Andrew F. Laine; Elsa D. Angelini (ISBI, 2019)

SAPSAM - Sparsely Annotated Pathological Sign Activation Maps - A Novel Approach To Train Convolutional Neural Networks On Lung CT Scans Using Binary Labels Only. - Mario Zusag; Sujal R. Desai; Marcello Di Paolo; Thomas Semple; Anand Shah; Elsa D. Angelini (ISBI, 2019)

Transfer Learning from Partial Annotations for Whole Brain Segmentation. - Chengliang Dai; Yuanhan Mo; Elsa D. Angelini; Yike Guo; Wenjia Bai (DART/MIL3ID@MICCAI, 2019)

Vertebral corners detection on sagittal X-rays based on shape modelling, random forest classifiers and dedicated visual features. - Shahin Ebrahimi; Laurent Gajny; Wafa Skalli; Elsa D. Angelini (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2019)

Quantifying Brain [18F]FDG Uptake Noninvasively by Combining Medical Health Records and Dynamic PET Imaging Data. - Elisa Roccia; Arthur Mikhno; R. Todd Ogden; J. John Mann; Andrew F. Laine; Elsa D. Angelini; Francesca Zanderigo (IEEE J. Biomed. Health Informatics, 2019)

Self-training for Brain Tumour Segmentation with Uncertainty Estimation and Biophysics-Guided Survival Prediction. - Chengliang Dai; Shuo Wang 011; Hadrien Raynaud; Yuanhan Mo; Elsa D. Angelini; Yike Guo; Wenjia Bai (BrainLes@MICCAI (1), 2020)

Encoding Human Cortex Using Spherical CNNs - A Study on Alzheimer's Disease Classification. - Hugo Barbaroux; Xinyang Feng; Jie Yang 041; Andrew F. Laine; Elsa D. Angelini (ISBI, 2020)

Machine-Learning on Liver Ultrasound to Stratify Multiple Diseases via Blood-Vessels and Perfusion Characteristics. - Jules Bayet; Tim Hoogenboom; Rohini Sharma; Elsa D. Angelini (ISBI, 2020)

Segmentation and Uncertainty Measures of Cardiac Substrates within Optical Coherence Tomography Images via Convolutional Neural Networks. - Ziyi Huang; Yu Gan 003; Theresa Lye; Darnel Theagene; Spandana Chintapalli; Simeran Virdi; Andrew Laine; Elsa D. Angelini; Christine P. Hendon (ISBI, 2020)

Suggestive Annotation of Brain Tumour Images with Gradient-Guided Sampling. - Chengliang Dai; Shuo Wang 011; Yuanhan Mo; Kaichen Zhou; Elsa D. Angelini; Yike Guo; Wenjia Bai (MICCAI (4), 2020)

Heterogeneity Measurement of Cardiac Tissues Leveraging Uncertainty Information from Image Segmentation. - Ziyi Huang; Yu Gan 003; Theresa Lye; Haofeng Zhang 002; Andrew Laine; Elsa D. Angelini; Christine P. Hendon (MICCAI (1), 2020)

Suggestive Annotation of Brain Tumour Images with Gradient-guided Sampling. - Chengliang Dai; Shuo Wang 011; Yuanhan Mo; Elsa D. Angelini; Yike Guo; Wenjia Bai (CoRR, 2020)

Novel Subtypes of Pulmonary Emphysema Based on Spatially-Informed Lung Texture Learning. - Jie Yang 041; Elsa D. Angelini; Pallavi P. Balte; Eric A. Hoffman; John H. M. Austin; Benjamin M. Smith; R. Graham Barr; Andrew F. Laine (CoRR, 2020)

Simultaneous left atrium anatomy and scar segmentations via deep learning in multiview information with attention. - Guang Yang 006; Jun Chen; Zhifan Gao; Shuo Li 001; Hao Ni 001; Elsa D. Angelini; Tom Wong; Raad Mohiaddin; Eva Nyktari; Ricardo Wage; Lei Xu 037; Yanping Zhang 001; et al. (Future Gener. Comput. Syst., 2020)

Characterizing Alzheimer's Disease With Image and Genetic Biomarkers Using Supervised Topic Models. - Jie Yang 041; Xinyang Feng; Andrew F. Laine; Elsa D. Angelini (IEEE J. Biomed. Health Informatics, 2020)

Co-Seg: An Image Segmentation Framework Against Label Corruption. - Ziyi Huang; Haofeng Zhang 002; Andrew Laine; Elsa D. Angelini; Christine P. Hendon; Yu Gan 003 (ISBI, 2021)

Enhanced-Quality Gan (EQ-GAN) on Lung CT Scans: Toward Truth and Potential Hallucinations. - Martin Jammes-Floreani; Andrew F. Laine; Elsa D. Angelini (ISBI, 2021)

3d Pathological Signs Detection And Scoring On CPA CT Lung Scans. - Afonso Nunes; Sujal R. Desai; Thomas Semple; Anand Shah; Elsa D. Angelini (ISBI, 2021)

Unsupervised Clustering Of Airway Tree Structures On High-Resolution CT: The Mesa Lung Study. - Artur Wysoczanski; Elsa D. Angelini; Benjamin M. Smith; Eric A. Hoffman; Grant T. Hiura; Yifei Sun; R. Graham Barr; Andrew F. Laine (ISBI, 2021)

3D U-Net Based Semantic Segmentation of Kidneys and Renal Masses on Contrast-Enhanced CT. - Mingyang Zang; Artur Wysoczanski; Elsa D. Angelini; Andrew F. Laine (KiTS@MICCAI, 2021)

Recursive Refinement Network for Deformable Lung Registration between Exhale and Inhale CT Scans. - Xinzi He; Jia Guo; Xuzhe Zhang; Hanwen Bi; Sarah E. Gerard; David W. Kaczka; Amin Motahari; Eric A. Hoffman; Joseph M. Reinhardt; R. Graham Barr; Elsa D. Angelini; Andrew Laine (CoRR, 2021)

QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Metrics and Benchmarking Results. - Raghav Mehta; Angelos Filos; Ujjwal Baid; Chiharu Sako; Richard McKinley; Michael Rebsamen; Katrin Dätwyler; Raphael Meier; Piotr Radojewski; Gowtham Krishnan Murugesan; Sahil S. Nalawade; Chandan Ganesh; et al. (CoRR, 2021)

Novel Subtypes of Pulmonary Emphysema Based on Spatially-Informed Lung Texture Learning: The Multi-Ethnic Study of Atherosclerosis (MESA) COPD Study. - Jie Yang 041; Elsa D. Angelini; Pallavi P. Balte; Eric A. Hoffman; John H. M. Austin; Benjamin M. Smith; R. Graham Barr; Andrew F. Laine (IEEE Trans. Medical Imaging, 2021)

Smart Learning of Click and Refine for Nuclei Segmentation on Histology Images. - Antoine Habis; Vannary Meas-Yedid; Daniel Felipe Gonzalez Obando; Jean-Christophe Olivo-Marin; Elsa D. Angelini (ICIP, 2022)

Suggestive annotation of brain MR images with gradient-guided sampling. - Chengliang Dai; Shuo Wang 011; Yuanhan Mo; Elsa D. Angelini; Yike Guo; Wenjia Bai (Medical Image Anal., 2022)

Sparse Non-Negative Matrix Factorization for Preclinical Bioluminescent Imaging. - Erwan Dereure; Christophe Kervazo; Johanne Seguin; Anikitos Garofalakis; Nathalie Mignet; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2023)

Tracking Intermittent Particles with Self-Learned Visual Features. - Raphael Reme; Victor Piriou; Alison Hanson; Rafael Yuste; Alasdair Newson; Elsa D. Angelini; Jean-Christophe Olivo-Marin; Thibault Lagache (ISBI, 2023)

Multi-View Cnn For Total Lung Volume Inference On Cardiac Computed Tomography. - Artur Wysoczanski; Elsa D. Angelini; Yifei Sun; Benjamin M. Smith; Eric A. Hoffman; Karen Stukovsky; Matthew J. Budoff; Karol E. Watson; John Jeffrey Carr; Elizabeth C. Oelsner; R. Graham Barr; Andrew F. Laine (ISBI, 2023)

Cardiac Adipose Tissue Segmentation via Image-Level Annotations. - Ziyi Huang; Yu Gan 003; Theresa Lye; Yanchen Liu; Haofeng Zhang 002; Andrew Laine; Elsa D. Angelini; Christine P. Hendon (IEEE J. Biomed. Health Informatics, 2023)

MAPSeg: Unified Unsupervised Domain Adaptation for Heterogeneous Medical Image Segmentation Based on 3D Masked Autoencoding and Pseudo-Labeling. - Xuzhe Zhang; Yuhao Wu; Elsa D. Angelini; Ang Li 005; Jia Guo; Jerod M. Rasmussen; Thomas G. O'Connor; Pathik D. Wadhwa; Andrea Parolin Jackowski; Hai Li 001; Jonathan Posner; Andrew F. Laine; et al. (CVPR, 2024)

Wavelet-Based Sparse Non-Negative Matrix Factorization for Bioluminescent Imaging Unmixing. - Erwan Dereure; Christophe Kervazo; Johanne Seguin; Anikitos Garofalakis; Nathalie Mignet; Elsa D. Angelini; Jean-Christophe Olivo-Marin (ISBI, 2024)

Unsupervised Airway Tree Clustering with Deep Learning: the Multi-Ethnic Study of Atherosclerosis (Mesa) Lung Study. - Sneha N. Naik; Elsa D. Angelini; R. Graham Barr; Norrina Allen; Alain Bertoni; Eric A. Hoffman; Ani Manichaikul; Jim Pankow; Wendy Post; Yifei Sun; Karol E. Watson; Benjamin M. Smith; et al. (ISBI, 2024)

Particle Tracking in Biological Images with Optical-Flow Enhanced Kalman Filtering. - Raphael Reme; Alasdair Newson; Elsa D. Angelini; Jean-Christophe Olivo-Marin; Thibault Lagache (ISBI, 2024)

Robust Quantification of Percent Emphysema on CT Via Domain Attention: The Multi-Ethnic Study of Atherosclerosis (MESA) Lung Study. - Xuzhe Zhang; Elsa D. Angelini; Eric A. Hoffman; Karol E. Watson; Benjamin M. Smith; R. Graham Barr; Andrew F. Laine (ISBI, 2024)

Dense Self-Supervised Learning for Medical Image Segmentation. - Maxime Seince; Loïc Le Folgoc; Luiz Augusto Facury de Souza; Elsa D. Angelini (MIDL, 2024)

Scribble-based fast weak-supervision and interactive corrections for segmenting whole slide images. - Antoine Habis; Roy Rosman Nathanson; Vannary Meas-Yedid; Elsa D. Angelini; Jean-Christophe Olivo-Marin (CoRR, 2024)

Robust deep labeling of radiological emphysema subtypes using squeeze and excitation convolutional neural networks: The MESA Lung and SPIROMICS Studies. - Artur Wysoczanski; Nabil Ettehadi; Soroush Arabshahi; Yifei Sun; Karen Hinkley Stukovsky; Karol E. Watson; MeiLan K. Han; Erin D. Michos; Alejandro P. Comellas; Eric A. Hoffman; Andrew F. Laine; R. Graham Barr; et al. (CoRR, 2024)

Deep ContourFlow: Advancing Active Contours with Deep Learning. - Antoine Habis; Vannary Meas-Yedid; Elsa D. Angelini; Jean-Christophe Olivo-Marin (CoRR, 2024)

Multi-View Transformers for Airway-to-Lung Ratio Inference on Cardiac CT Scans: The C4R Study. - Sneha N. Naik; Elsa D. Angelini; Eric A. Hoffman; Elizabeth C. Oelsner; R. Graham Barr; Benjamin M. Smith; Andrew F. Laine (ISBI, 2025)

SINETRA: A Versatile Framework for Evaluating Single Neuron Tracking in Behaving Animals. - Raphael Reme; Alasdair Newson; Elsa D. Angelini; Jean-Christophe Olivo-Marin; Thibault Lagache (ISBI, 2025)