A quantitative model of error accumulation during PCR amplification. - Elsje Pienaar; Melanie Theron; Michael Nelson; Hendrik J. Viljoen (Comput. Biol. Chem., 2006)

Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis. - Aaron M. Fluitt; Elsje Pienaar; Hendrik J. Viljoen (Comput. Biol. Chem., 2007)

A fundamental study of the PCR amplification of GC-rich DNA templates. - T. G. Mamedov; Elsje Pienaar; Scott E. Whitney; J. R. TerMaat; G. Carvill; R. Goliath; A. Subramanian; Hendrik J. Viljoen (Comput. Biol. Chem., 2008)

A model of tuberculosis transmission and intervention strategies in an urban residential area. - Elsje Pienaar; Aaron M. Fluitt; Scott E. Whitney; Alison G. Freifeld; Hendrik J. Viljoen (Comput. Biol. Chem., 2010)

A state-time epidemiology model of tuberculosis: Importance of re-infection. - Steve J. Viljoen; Elsje Pienaar; Hendrik J. Viljoen (Comput. Biol. Chem., 2012)

In silico evaluation and exploration of antibiotic tuberculosis treatment regimens. - Elsje Pienaar; Véronique Dartois; Jennifer J. Linderman; Denise E. Kirschner (BMC Syst. Biol., 2015)

Comparing efficacies of moxifloxacin, levofloxacin and gatifloxacin in tuberculosis granulomas using a multi-scale systems pharmacology approach. - Elsje Pienaar; Jansy Sarathy; Brendan Prideaux; Jillian Dietzold; Véronique Dartois; Denise E. Kirschner; Jennifer J. Linderman (PLoS Comput. Biol., 2017)

Mathematical modeling of N-803 treatment in SIV-infected non-human primates. - Jonathan W. Cody; Amy L. Ellis-Connell; Shelby L. O'Connor; Elsje Pienaar (PLoS Comput. Biol., 2021)

Mathematical modeling indicates that regulatory inhibition of CD8+ T cell cytotoxicity can limit efficacy of IL-15 immunotherapy in cases of high pre-treatment SIV viral load. - Jonathan W. Cody; Amy L. Ellis-Connell; Shelby L. O'Connor; Elsje Pienaar (PLoS Comput. Biol., 2023)

Agent-based model predicts that layered structure and 3D movement work synergistically to reduce bacterial load in 3D in vitro models of tuberculosis granuloma. - Alexa Petrucciani; Alexis Hoerter; Leigh Kotze; Nelita Du Plessis; Elsje Pienaar (PLoS Comput. Biol., 2024)