Towards the Reconstruction of the Genome-Scale Metabolic Model of Lactobacillus acidophilus La-14. - Emanuel Cunha; Ahmad A. Zeidan; Oscar Dias (PACBB, 2020)

Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database. - Alexandre Oliveira; Emanuel Cunha; Fernando Cruz; João Capela; João Carlos Sequeira; Marta Sampaio; Oscar Dias (PACBB, 2021)

Exploring Xylella fastidiosa's Metabolic Traits Using a GSM Model of the Phytopathogenic Bacterium. - Alexandre Oliveira; Emanuel Cunha; Miguel Silva; Cristiana Faria; Oscar Dias (PACBB, 2022)

Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool. - Alexandre Oliveira; Emanuel Cunha; Fernando Cruz; João Capela; João Carlos Sequeira; Marta Sampaio; Cláudia Sampaio; Oscar Dias (J. Integr. Bioinform., 2022)

The first multi-tissue genome-scale metabolic model of a woody plant highlights suberin biosynthesis pathways in Quercus suber. - Emanuel Cunha; Miguel Silva; Inês Chaves; Hüseyin Demirci; Davide Lagoa; Diogo Lima; Miguel Rocha 001; Isabel Rocha; Oscar Dias (PLoS Comput. Biol., 2023)

TranSyT, an innovative framework for identifying transport systems. - Emanuel Cunha; Davide Lagoa; José P. Faria; Filipe Liu; Christopher S. Henry; Oscar Dias (Bioinform., 2023)