A Meta-Graph for the Construction of an RNA-Centered Knowledge Graph. - Emanuele Cavalleri; Sara Bonfitto; Alberto Cabri; Jessica Gliozzo; Paolo Perlasca; Mauricio Soto Gomez; Gabriella Trucco; Elena Casiraghi; Giorgio Valentini; Marco Mesiti (IWBBIO (1), 2023)

Towards the Construction of an RNA-centered Knowledge Graph. - Emanuele Cavalleri; Sara Bonfitto; Alberto Cabri; Jessica Gliozzo; Paolo Perlasca; Mauricio Soto Gomez; Gabriella Trucco; Elena Casiraghi; Giorgio Valentini; Marco Mesiti (SEBD, 2023)

An Open-Source Knowledge Graph Ecosystem for the Life Sciences. - Tiffany J. Callahan; Ignacio J. Tripodi; Adrianne L. Stefanski; Luca Cappelletti; Sanya Bathla Taneja; Jordan M. Wyrwa; Elena Casiraghi; Nicolas A. Matentzoglu; Justin T. Reese; Jonathan C. Silverstein; Charles Tapley Hoyt; Richard D. Boyce; et al. (CoRR, 2023)

RNA-KG: An ontology-based knowledge graph for representing interactions involving RNA molecules. - Emanuele Cavalleri; Alberto Cabri; Mauricio Soto Gomez; Sara Bonfitto; Paolo Perlasca; Jessica Gliozzo; Tiffany J. Callahan; Justin T. Reese; Peter N. Robinson; Elena Casiraghi; Giorgio Valentini; Marco Mesiti (CoRR, 2023)

REAL: A Retrieval-Augmented Entity Linking Approach for Biomedical Concept Recognition. - Darya Shlyk; Tudor Groza; Marco Mesiti; Stefano Montanelli; Emanuele Cavalleri (BioNLP@ACL, 2024)

Fine-Tuning of Conditional Transformers Improves the Generation of Functionally Characterized Proteins. - Marco Nicolini; Dario Malchiodi; Alberto Cabri; Emanuele Cavalleri; Marco Mesiti; Alberto Paccanaro; Peter N. Robinson; Justin T. Reese; Elena Casiraghi; Giorgio Valentini (BIOSTEC (1), 2024)

On the Extraction of Meaningful RNA Interactions from Scientific Publications through LLMs and SPIRES. - Emanuele Cavalleri; Marco Mesiti (EDBT/ICDT Workshops, 2024)

Construction and Enhancement of an RNA-Based Knowledge Graph for Discovering New RNA Drugs. - Emanuele Cavalleri; Marco Mesiti (ICDE, 2024)

Initial achievements in relation extraction from RNA-focused scientific papers. - Emanuele Cavalleri; Mauricio Soto Gomez; Ali Pashaeibarough; Dario Malchiodi; J. Harry Caufield; Justin T. Reese; Christopher J. Mungall; Peter N. Robinson; Elena Casiraghi; Giorgio Valentini; Marco Mesiti (SEBD, 2024)

SPIREX: Improving LLM-based relation extraction from RNA-focused scientific literature using graph machine learning. - Emanuele Cavalleri; Mauricio Soto Gomez; Ali Pashaeibarough; Dario Malchiodi; J. Harry Caufield; Justin T. Reese; Chris Mungall; Peter N. Robinson; Elena Casiraghi; Giorgio Valentini; Marco Mesiti (VLDB Workshops, 2024)

Intrinsic-dimension analysis for guiding dimensionality reduction and data fusion in multi-omics data processing. - Jessica Gliozzo; Mauricio Soto Gomez; Valentina Guarino; Arturo Bonometti; Alberto Cabri; Emanuele Cavalleri; Justin T. Reese; Peter N. Robinson; Marco Mesiti; Giorgio Valentini; Elena Casiraghi (Artif. Intell. Medicine, 2025)

RNA-KG v2.0: An RNA-centered Knowledge Graph with Properties. - Emanuele Cavalleri; Paolo Perlasca; Marco Mesiti (CoRR, 2025)