The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis. - Matteo Brilli; Marco Fondi; Renato Fani; Alessio Mengoni; Lorenzo Ferri; Marco Bazzicalupo; Emanuele G. Biondi (BMC Syst. Biol., 2010)

CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes. - Marco Galardini; Emanuele G. Biondi; Marco Bazzicalupo; Alessio Mengoni (Source Code Biol. Medicine, 2011)

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome. - Marco Galardini; Matteo Brilli; Giulia Spini; Matteo Rossi; Bianca Roncaglia; Alessia Bani; Manuela Chiancianesi; Marco Moretto; Kristof Engelen; Giovanni Bacci 002; Francesco Pini; Emanuele G. Biondi; et al. (PLoS Comput. Biol., 2015)