Finite State Models for the Generation of Large Corpora of Natural Language Texts. - Domenico Cantone; Salvatore Cristofaro; Simone Faro; Emanuele Giaquinta (FSMNLP, 2008)

An Efficient Algorithm for Approximate Pattern Matching with Swaps. - Matteo Campanelli; Domenico Cantone; Simone Faro; Emanuele Giaquinta (Stringology, 2009)

Bit-(Parallelism)2: Getting to the Next Level of Parallelism. - Domenico Cantone; Simone Faro; Emanuele Giaquinta (FUN, 2010)

Approximate String Matching Allowing for Inversions and Translocations. - Domenico Cantone; Simone Faro; Emanuele Giaquinta (Stringology, 2010)

String matching with inversions and translocations in linear average time (most of the time). - Szymon Grabowski; Simone Faro; Emanuele Giaquinta (Inf. Process. Lett., 2011)

A compact representation of nondeterministic (suffix) automata for the bit-parallel approach. - Domenico Cantone; Simone Faro; Emanuele Giaquinta (Inf. Comput., 2012)

Pattern Matching with Swaps in Practice. - Matteo Campanelli; Domenico Cantone; Simone Faro; Emanuele Giaquinta (Int. J. Found. Comput. Sci., 2012)

Adapting Boyer-Moore-like Algorithms for Searching Huffman Encoded Texts. - Domenico Cantone; Simone Faro; Emanuele Giaquinta (Int. J. Found. Comput. Sci., 2012)

On the bit-parallel simulation of the nondeterministic Aho-Corasick and suffix automata for a set of patterns. - Domenico Cantone; Simone Faro; Emanuele Giaquinta (J. Discrete Algorithms, 2012)

Motif Matching Using Gapped Patterns. - Emanuele Giaquinta; Kimmo Fredriksson; Szymon Grabowski; Esko Ukkonen (IWOCA, 2013)

Indexes for Jumbled Pattern Matching in Strings, Trees and Graphs. - Ferdinando Cicalese; Travis Gagie; Emanuele Giaquinta; Eduardo Sany Laber; Zsuzsanna Lipták; Romeo Rizzi; Alexandru I. Tomescu (SPIRE, 2013)

New algorithms for binary jumbled pattern matching. - Emanuele Giaquinta; Szymon Grabowski (Inf. Process. Lett., 2013)

Approximate pattern matching with k-mismatches in packed text. - Emanuele Giaquinta; Szymon Grabowski; Kimmo Fredriksson (Inf. Process. Lett., 2013)

Fast Matching of Transcription Factor Motifs Using Generalized Position Weight Matrix Models. - Emanuele Giaquinta; Szymon Grabowski; Esko Ukkonen (J. Comput. Biol., 2013)

An Effective Exact Algorithm and a New Upper Bound for the Number of Contacts in the Hydrophobic-Polar Two-Dimensional Lattice Model. - Emanuele Giaquinta; Laura Pozzi 001 (J. Comput. Biol., 2013)

Alternative Algorithms for Lyndon Factorization. - Sukhpal Singh Ghuman; Emanuele Giaquinta; Jorma Tarhio (Stringology, 2014)

Text searching allowing for inversions and translocations of factors. - Domenico Cantone; Simone Faro; Emanuele Giaquinta (Discret. Appl. Math., 2014)

On a compact encoding of the swap automaton. - Kimmo Fredriksson; Emanuele Giaquinta (Inf. Process. Lett., 2014)

Motif matching using gapped patterns. - Emanuele Giaquinta; Kimmo Fredriksson; Szymon Grabowski; Alexandru I. Tomescu; Esko Ukkonen (Theor. Comput. Sci., 2014)

Filtration Algorithms for Approximate Order-Preserving Matching. - Tamanna Chhabra; Emanuele Giaquinta; Jorma Tarhio (SPIRE, 2015)

Run-Length Encoded Nondeterministic KMP and Suffix Automata. - Emanuele Giaquinta (CIAA, 2015)

Longest common substrings with k mismatches. - Tomás Flouri; Emanuele Giaquinta; Kassian Kobert; Esko Ukkonen (Inf. Process. Lett., 2015)

Maximum Convex Subgraphs Under I/O Constraint for Automatic Identification of Custom Instructions. - Emanuele Giaquinta; Anadi Mishra; Laura Pozzi 001 (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2015)

Technology beats algorithms (in exact string matching). - Jorma Tarhio; Jan Holub 001; Emanuele Giaquinta (Softw. Pract. Exp., 2017)

Lyndon Factorization Algorithms for Small Alphabets and Run-Length Encoded Strings. - Sukhpal Singh Ghuman; Emanuele Giaquinta; Jorma Tarhio (Algorithms, 2019)

RegionSeeker: Automatically Identifying and Selecting Accelerators From Application Source Code. - Georgios Zacharopoulos; Lorenzo Ferretti; Emanuele Giaquinta; Giovanni Ansaloni; Laura Pozzi 001 (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2019)