A neural-network-based method for predicting protein stability changes upon single point mutations. - Emidio Capriotti; Piero Fariselli; Rita Casadio (ISMB/ECCB (Supplement of Bioinformatics), 2004)

Predicting protein stability changes from sequences using support vector machines. - Emidio Capriotti; Piero Fariselli; Remo Calabrese; Rita Casadio (ECCB/JBI, 2005)

I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. - Emidio Capriotti; Piero Fariselli; Rita Casadio (Nucleic Acids Res., 2005)

Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information. - Emidio Capriotti; Remo Calabrese; Rita Casadio (Bioinform., 2006)

The WWWH of remote homolog detection: The state of the art. - Piero Fariselli; Ivan Rossi; Emidio Capriotti; Rita Casadio (Briefings Bioinform., 2007)

K-Fold: a tool for the prediction of the protein folding kinetic order and rate. - Emidio Capriotti; Rita Casadio (Bioinform., 2007)

RNA structure alignment by a unit-vector approach. - Emidio Capriotti; Marc A. Martí-Renom (ECCB, 2008)

A three-state prediction of single point mutations on protein stability changes. - Emidio Capriotti; Piero Fariselli; Ivan Rossi; Rita Casadio (BMC Bioinform., 2008)

SARA: a server for function annotation of RNA structures. - Emidio Capriotti; Marc A. Martí-Renom (Nucleic Acids Res., 2009)

Quantifying the relationship between sequence and three-dimensional structure conservation in RNA. - Emidio Capriotti; Marc A. Martí-Renom (BMC Bioinform., 2010)

Session Introduction. - Can Alkan; Emidio Capriotti; Eleazar Eskin; Fereydoun Hormozdiari; Maricel G. Kann (Pacific Symposium on Biocomputing, 2011)

All-atom knowledge-based potential for RNA structure prediction and assessment. - Emidio Capriotti; Tomás Norambuena; Marc A. Martí-Renom; Francisco Melo 001 (Bioinform., 2011)

Genome Analysis. - Guy Haskin Fernald; Emidio Capriotti; Roxana Daneshjou; Konrad J. Karczewski; Russ B. Altman (Bioinform., 2011)

Bioinformatics challenges for personalized medicine. - Guy Haskin Fernald; Emidio Capriotti; Roxana Daneshjou; Konrad J. Karczewski; Russ B. Altman (Bioinform., 2011)

Improving the prediction of disease-related variants using protein three-dimensional structure. - Emidio Capriotti; Russ B. Altman (BMC Bioinform., 2011)

Bioinformatics for personal genome interpretation. - Emidio Capriotti; Nathan L. Nehrt; Maricel G. Kann; Yana Bromberg (Briefings Bioinform., 2012)

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package. - Carsten Kemena; Giovanni Bussotti; Emidio Capriotti; Marc A. Martí-Renom; Cédric Notredame (Bioinform., 2013)

WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures. - Tomás Norambuena; Jorge F. Cares; Emidio Capriotti; Francisco Melo 001 (Bioinform., 2013)

ContrastRank: a new method for ranking putative cancer driver genes and classification of tumor samples. - Rui Tian; Malay Kumar Basu; Emidio Capriotti (Bioinform., 2014)

SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments. - Paolo Di Tommaso; Giovanni Bussotti; Carsten Kemena; Emidio Capriotti; Maria Chatzou; Pablo Prieto; Cédric Notredame (Nucleic Acids Res., 2014)

WALTZ-DB: a benchmark database of amyloidogenic hexapeptides. - Jacinte Beerten; Joost J. J. van Durme; Rodrigo Gallardo; Emidio Capriotti; Louise C. Serpell; Frederic Rousseau 001; Joost Schymkowitz (Bioinform., 2015)

Editor's Choice: SNP-SIG 2013: the state of the art of genomic variant interpretation. - Yana Bromberg; Emidio Capriotti (Bioinform., 2015)

PhD-SNPg: a webserver and lightweight tool for scoring single nucleotide variants. - Emidio Capriotti; Piero Fariselli (Nucleic Acids Res., 2017)

Predicting gene expression level in E. coli from mRNA sequence information. - Linlin Zhao; Nima Abedpour; Christopher Blum; Petra Kolkhof; Mathias Beller; Markus Kollmann; Emidio Capriotti (CIBCB, 2019)

DDGun: an untrained method for the prediction of protein stability changes upon single and multiple point variations. - Ludovica Montanucci; Emidio Capriotti; Yotam Frank; Nir Ben-Tal; Piero Fariselli (BMC Bioinform., 2019)

Fido-SNP: the first webserver for scoring the impact of single nucleotide variants in the dog genome. - Emidio Capriotti; Ludovica Montanucci; Giuseppe Profiti; Ivan Rossi; Diana Giannuzzi; Luca Aresu; Piero Fariselli (Nucleic Acids Res., 2019)

Calibrating variant-scoring methods for clinical decision making. - Silvia Benevenuta; Emidio Capriotti; Piero Fariselli (Bioinform., 2021)

Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset. - Corrado Pancotti; Silvia Benevenuta; Giovanni Birolo; Virginia Alberini; Valeria Repetto; Tiziana Sanavia; Emidio Capriotti; Piero Fariselli (Briefings Bioinform., 2022)

DDGun: an untrained predictor of protein stability changes upon amino acid variants. - Ludovica Montanucci; Emidio Capriotti; Giovanni Birolo; Silvia Benevenuta; Corrado Pancotti; Dennis Lal; Piero Fariselli (Nucleic Acids Res., 2022)

PhD-SNPg: updating a webserver and lightweight tool for scoring nucleotide variants. - Emidio Capriotti; Piero Fariselli (Nucleic Acids Res., 2023)

Mass Balance Approximation of Unfolding Improves Potential-Like Methods for Protein Stability Predictions. - Ivan Rossi; Guido Barducci; Tiziana Sanavia; Paola Turina; Emidio Capriotti; Piero Fariselli (CoRR, 2025)

Open and Sustainable AI: challenges, opportunities and the road ahead in the life sciences. - Gavin Farrell; Eleni Adamidi; Rafael Andrade Buono; Mihail Anton; Omar Abdelghani Attafi; Salvador Capella-Gutiérrez; Emidio Capriotti; Leyla Jael Castro; Davide Cirillo; Lisa C. Crossman; Christophe Dessimoz; Alexandros C. Dimopoulos; et al. (CoRR, 2025)